Bio.RealWorld.GENCODE

Documentation

data Gene

Constructors

Gene

Fields

• geneName :: !(CI ByteString)
• geneId :: !ByteString
• geneChrom :: !ByteString
• geneStart :: !Int
• geneEnd :: !Int
• geneStrand :: !Bool

Instances

Show Gene

Methods

showsPrec :: Int -> Gene -> ShowS

show :: Gene -> String

showList :: [Gene] -> ShowS

readGenes :: MonadResource m => FilePath -> Source m Gene

Read gene information from Gencode GTF file

readGenes' :: FilePath -> IO [Gene]

parseGenes :: Monad m => Conduit ByteString m Gene