Bio.Sequence.Stockholm.Stream

Parsing of an Stockholm 1.0 file into a stream of events.

Streams

data Event

An event (roughly a line in the file).

Constructors

EvHeader

# STOCKHOLM 1.0

EvEnd

//

EvComment ByteString

# ....

EvSeqData ByteString ByteString

seqlabel seqdata

EvGF ByteString ByteString

#GF feature data

EvGC ByteString ByteString

#GC feature data

EvGS ByteString ByteString ByteString

#GS seqlabel feature data

EvGR ByteString ByteString ByteString

#GR seqlabel feature data

Instances

Eq Event

Ord Event

Show Event

parseEvents :: MonadThrow m => Conduit ByteString m Event

Conduit that parses a file into events.

renderEvents :: MonadUnsafeIO m => Conduit Event m ByteString

Conduit that pretty prints an event stream into a file.