cabal-version: 1.12
name: cobot-io
version: 0.1.3.2
license: BSD3
license-file: LICENSE
copyright: 2020, Biocad
maintainer: pavel@yakovlev.me
author: Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov
homepage: https://github.com/biocad/cobot-io#readme
bug-reports: https://github.com/biocad/cobot-io/issues
synopsis: Biological data file formats and IO
description:
    Please see the README on GitHub at <https://github.com/biocad/cobot-io#readme>
category: Bio
build-type: Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
    type: git
    location: https://github.com/biocad/cobot-io

library
    exposed-modules:
        Bio.ABI
        Bio.ABI.Clean
        Bio.ABI.Decode
        Bio.FASTA
        Bio.FASTA.Parser
        Bio.FASTA.Type
        Bio.FASTA.Writer
        Bio.GB
        Bio.GB.Parser
        Bio.GB.Type
        Bio.GB.Writer
        Bio.MAE
        Bio.MAE.Parser
        Bio.MAE.Type
        Bio.MMTF
        Bio.MMTF.Decode
        Bio.MMTF.Decode.Codec
        Bio.MMTF.Decode.MessagePack
        Bio.MMTF.MessagePack
        Bio.MMTF.Type
        Bio.PDB
        Bio.PDB.BondRestoring
        Bio.PDB.Functions
        Bio.PDB.Parser
        Bio.PDB.Reader
        Bio.PDB.Type
        Bio.Sequence
        Bio.Sequence.Basecalled
        Bio.Sequence.Basecalled.Type
        Bio.Sequence.Class
        Bio.Sequence.Functions.Marking
        Bio.Sequence.Functions.Sequence
        Bio.Sequence.Functions.Weight
        Bio.Sequence.Utilities
        Bio.Structure
        Bio.Structure.Functions
        Bio.Uniprot
        Bio.Uniprot.Parser
        Bio.Uniprot.Type
    hs-source-dirs: src
    other-modules:
        Paths_cobot_io
    default-language: Haskell2010
    default-extensions: DeriveGeneric DeriveFunctor DeriveFoldable
                        DeriveAnyClass FlexibleInstances InstanceSigs MultiParamTypeClasses
                        RecordWildCards ScopedTypeVariables OverloadedStrings
                        TypeApplications TypeFamilies DataKinds ConstraintKinds
                        TypeOperators TemplateHaskell FlexibleContexts
    build-depends:
        array ==0.5.*,
        attoparsec >=0.10 && <0.14,
        base >=4.7 && <5,
        binary >=0.8.3.0 && <1.0,
        bytestring >=0.10.8.1 && <0.11,
        containers >=0.5.7.1 && <0.7,
        data-msgpack >=0.0.9 && <0.1,
        deepseq ==1.4.*,
        http-conduit ==2.3.*,
        hyraxAbif >=0.2.3.15 && <0.2.4.0,
        lens >=4.16 && <5.0,
        linear ==1.20.*,
        mtl >=2.2.1 && <2.3.0,
        split >=0.2.3.4 && <0.3,
        text >=1.2.2.1 && <1.3,
        vector >=0.12.1.2 && <0.13

test-suite cobot-io-test
    type: exitcode-stdio-1.0
    main-is: Spec.hs
    hs-source-dirs: test
    other-modules:
        ABISpec
        FastaParserSpec
        FASTASpec
        FastaWriterSpec
        GBParserSpec
        GBWriterSpec
        MAEParserSpec
        MAESpec
        MMTFSpec
        PDBParserSpec
        PDBSpec
        SequenceSpec
        StructureSpec
        UniprotSpec
        Paths_cobot_io
    default-language: Haskell2010
    default-extensions: OverloadedStrings TypeFamilies
    ghc-options: -threaded -rtsopts -with-rtsopts=-N
    build-depends:
        QuickCheck >=2.9.2 && <2.14,
        array ==0.5.*,
        attoparsec >=0.10 && <0.14,
        base >=4.7 && <5,
        binary >=0.8.3.0 && <1.0,
        bytestring >=0.10.8.1 && <0.11,
        cobot-io -any,
        containers >=0.5.7.1 && <0.7,
        data-msgpack >=0.0.9 && <0.1,
        deepseq ==1.4.*,
        directory >=1.3.6.0 && <1.4,
        hspec >=2.4.1 && <2.8,
        http-conduit ==2.3.*,
        hyraxAbif >=0.2.3.15 && <0.2.4.0,
        lens >=4.16 && <5.0,
        linear ==1.20.*,
        mtl >=2.2.1 && <2.3.0,
        neat-interpolation ==0.3.*,
        split >=0.2.3.4 && <0.3,
        text >=1.2.2.1 && <1.3,
        vector >=0.12.1.2 && <0.13