The dephd package

[Tags: gpl, program]

dephd - A simple tool for base calling and quality appraisal.

Reads files in phd-format (phred output), either specified individually, or in a directory (use the --input-dirs option to read directories or --input-list to read from an index file). Can also read FASTA with an associated quality file.

Can trim according to Lucy or Phred parameters, can mask by quality, can plot graphs (via gnuplot) of sequence quality to a window, or to JPG/EPS files. Can categorize sequences according to overall quality.

The Darcs repository is at http://malde.org/~ketil/biohaskell/dephd.


Properties

Versions0.0, 0.1, 0.1.1, 0.1.3, 0.1.4, 0.1.5, 0.1.6
Dependenciesbase (==3.*), bio (>=0.4), bytestring, directory, process, regex-compat
LicenseGPL
AuthorKetil Malde
MaintainerKetil Malde <ketil@malde.org>
CategoryBioinformatics
Home pagehttp://malde.org/~ketil/biohaskell/dephd
Executablesdephd
Upload dateTue Jun 16 10:38:03 UTC 2009
Uploaded byKetilMalde
Downloads509 total (31 in last 30 days)

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