The dephd package

[Tags: gpl, program]

dephd - A simple tool for base calling and quality appraisal.

Reads files in phd-format (phred output), either specified individually, or in a directory (use the --input-dirs option to read directories or --input-list to read from an index file). Can also read FASTA with an associated quality file.

Can trim according to Lucy or Phred parameters, can mask by quality, can plot graphs (via gnuplot) of sequence quality to a window, or to JPG/EPS files. Can categorize sequences according to overall quality.

The Darcs repository is at


Versions0.0, 0.1, 0.1.1, 0.1.3, 0.1.4, 0.1.5, 0.1.6
Dependenciesbase (==3.*), bio (>=0.4), bytestring, directory, process, regex-compat
AuthorKetil Malde
MaintainerKetil Malde <>
Home page
UploadedTue Jun 16 10:38:03 UTC 2009 by KetilMalde
Downloads909 total (61 in last 30 days)
StatusDocs pending
Build status unknown [no reports yet]


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