diversity: Return the diversity at each position for all sequences in a fasta file

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.

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Versions [RSS] 0.2.0.5, 0.3.0.0, 0.3.4.0, 0.3.4.1, 0.3.5.0, 0.3.5.1, 0.4.0.0, 0.4.0.1, 0.4.0.2, 0.5.0.0, 0.5.0.2, 0.6.0.0, 0.6.0.1, 0.6.0.2, 0.6.2.0, 0.6.2.1, 0.6.3.0, 0.7.0.0, 0.7.0.1, 0.7.0.3, 0.7.1.0, 0.7.1.1, 0.8.0.0, 0.8.0.1, 0.8.0.2, 0.8.1.0 (info)
Dependencies base (>=4.6 && <4.9), containers (>=0.5 && <0.6), diversity, fasta (>=0.5.3 && <0.6), math-functions (>=0.1 && <0.2), MonadRandom (>=0.3 && <0.4), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), pipes (>=4.1 && <4.2), random-shuffle (>=0.0 && <0.1), scientific (>=0.3 && <0.4), split (>=0.2 && <0.3) [details]
License GPL-2.0-only
Author Gregory W. Schwartz
Maintainer gregory.schwartz@drexel.edu
Category Bioinformatics
Home page https://github.com/GregorySchwartz/diversity
Uploaded by GregorySchwartz at 2015-04-20T20:18:52Z
Distributions LTSHaskell:0.8.1.0, NixOS:0.8.1.0
Reverse Dependencies 3 direct, 0 indirect [details]
Executables diversity
Downloads 18210 total (61 in the last 30 days)
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Status Docs available [build log]
Last success reported on 2015-04-20 [all 1 reports]