ELynx.Character.AminoAcidX

Creation date: Thu Oct 4 18:26:35 2018.

See header of Alphabet.

Extended amino acid with gaps. See also https://www.bioinformatics.org/sms/iupac.html or https://en.wikipedia.org/wiki/International_Union_of_Pure_and_Applied_Chemistry.

Amino Acid Code:  Three letter Code:  Amino Acid:
----------------  ------------------  -----------
A                 Ala                 Alanine
C                 Cys                 Cysteine
D                 Asp                 Aspartic Acid
E                 Glu                 Glutamic Acid
F                 Phe                 Phenylalanine
G                 Gly                 Glycine
H                 His                 Histidine
I                 Ile                 Isoleucine
K                 Lys                 Lysine
L                 Leu                 Leucine
M                 Met                 Methionine
N                 Asn                 Asparagine
P                 Pro                 Proline
Q                 Gln                 Glutamine
R                 Arg                 Arginine
S                 Ser                 Serine
T                 Thr                 Threonine
V                 Val                 Valine
W                 Trp                 Tryptophan
Y                 Tyr                 Tyrosine
----------------  ------------------  -----------
-                 Gap                 No amino acid
.                 Gap                 No amino acid

Documentation

data AminoAcidX

Amino acids.

Constructors

A

C

D

E

F

G

H

I

K

L

M

N

P

Q

R

S

T

V

W

Y

Gap

Instances

Bounded AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

minBound :: AminoAcidX

maxBound :: AminoAcidX

Enum AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

succ :: AminoAcidX -> AminoAcidX

pred :: AminoAcidX -> AminoAcidX

toEnum :: Int -> AminoAcidX

fromEnum :: AminoAcidX -> Int

enumFrom :: AminoAcidX -> [AminoAcidX]

enumFromThen :: AminoAcidX -> AminoAcidX -> [AminoAcidX]

enumFromTo :: AminoAcidX -> AminoAcidX -> [AminoAcidX]

enumFromThenTo :: AminoAcidX -> AminoAcidX -> AminoAcidX -> [AminoAcidX]

Read AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

readsPrec :: Int -> ReadS AminoAcidX

readList :: ReadS [AminoAcidX]

readPrec :: ReadPrec AminoAcidX

readListPrec :: ReadPrec [AminoAcidX]

Show AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

showsPrec :: Int -> AminoAcidX -> ShowS

show :: AminoAcidX -> String

showList :: [AminoAcidX] -> ShowS

Character AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

toWord :: AminoAcidX -> Word8

fromWord :: Word8 -> AminoAcidX

CharacterX AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

gap :: AminoAcidX

Eq AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

(==) :: AminoAcidX -> AminoAcidX -> Bool

(/=) :: AminoAcidX -> AminoAcidX -> Bool

Ord AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

compare :: AminoAcidX -> AminoAcidX -> Ordering

(<) :: AminoAcidX -> AminoAcidX -> Bool

(<=) :: AminoAcidX -> AminoAcidX -> Bool

(>) :: AminoAcidX -> AminoAcidX -> Bool

(>=) :: AminoAcidX -> AminoAcidX -> Bool

max :: AminoAcidX -> AminoAcidX -> AminoAcidX

min :: AminoAcidX -> AminoAcidX -> AminoAcidX

Unbox AminoAcidX

Defined in ELynx.Character.AminoAcidX

Vector Vector AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

basicUnsafeFreeze :: Mutable Vector s AminoAcidX -> ST s (Vector AminoAcidX)

basicUnsafeThaw :: Vector AminoAcidX -> ST s (Mutable Vector s AminoAcidX)

basicLength :: Vector AminoAcidX -> Int

basicUnsafeSlice :: Int -> Int -> Vector AminoAcidX -> Vector AminoAcidX

basicUnsafeIndexM :: Vector AminoAcidX -> Int -> Box AminoAcidX

basicUnsafeCopy :: Mutable Vector s AminoAcidX -> Vector AminoAcidX -> ST s ()

elemseq :: Vector AminoAcidX -> AminoAcidX -> b -> b

MVector MVector AminoAcidX

Defined in ELynx.Character.AminoAcidX

Methods

basicLength :: MVector s AminoAcidX -> Int

basicUnsafeSlice :: Int -> Int -> MVector s AminoAcidX -> MVector s AminoAcidX

basicOverlaps :: MVector s AminoAcidX -> MVector s AminoAcidX -> Bool

basicUnsafeNew :: Int -> ST s (MVector s AminoAcidX)

basicInitialize :: MVector s AminoAcidX -> ST s ()

basicUnsafeReplicate :: Int -> AminoAcidX -> ST s (MVector s AminoAcidX)

basicUnsafeRead :: MVector s AminoAcidX -> Int -> ST s AminoAcidX

basicUnsafeWrite :: MVector s AminoAcidX -> Int -> AminoAcidX -> ST s ()

basicClear :: MVector s AminoAcidX -> ST s ()

basicSet :: MVector s AminoAcidX -> AminoAcidX -> ST s ()

basicUnsafeCopy :: MVector s AminoAcidX -> MVector s AminoAcidX -> ST s ()

basicUnsafeMove :: MVector s AminoAcidX -> MVector s AminoAcidX -> ST s ()

basicUnsafeGrow :: MVector s AminoAcidX -> Int -> ST s (MVector s AminoAcidX)

newtype Vector AminoAcidX

Defined in ELynx.Character.AminoAcidX

newtype Vector AminoAcidX = V_AminoAcidX (Vector Word8)

newtype MVector s AminoAcidX

Defined in ELynx.Character.AminoAcidX

newtype MVector s AminoAcidX = MV_AminoAcidX (MVector s Word8)