ELynx.Import.Tree.Newick

Creation date: Thu Jan 17 14:56:27 2019.

Code partly taken from Biobase.Newick.Import.

Specifications

• In particular, no conversion from _ to (space) is done right now.

Documentation

type Parser = Parsec Void ByteString

Shortcut.

newick :: Parser (Tree PhyloByteStringLabel)

Parse a Newick tree.

manyNewick :: Parser [Tree PhyloByteStringLabel]

Parse many Newick trees.

forest :: Parser [Tree PhyloByteStringLabel]

A forest is a set of trees separated by , and enclosed by parentheses.

leaf :: Parser (Tree PhyloByteStringLabel)

A leaf is a node without children.

node :: Parser PhyloByteStringLabel

A node has a name and a branchLength.

name :: Parser ByteString

A name can be any string of printable characters except blanks, colons, semicolons, parentheses, and square brackets (and commas).

branchLength :: Parser Double

Branch lengths default to 0.