Index

averageDistanceRootLeaves	ELynx.Data.Tree.MeasurableTree
BDCD	ELynx.Distribution.BirthDeathCritical
bdcdLa	ELynx.Distribution.BirthDeathCritical
bdcdTOr	ELynx.Distribution.BirthDeathCritical
BDCNTD	ELynx.Distribution.BirthDeathCriticalNoTime
bdcntdLa	ELynx.Distribution.BirthDeathCriticalNoTime
BDD	ELynx.Distribution.BirthDeath
bddLa	ELynx.Distribution.BirthDeath
bddMu	ELynx.Distribution.BirthDeath
bddTOr	ELynx.Distribution.BirthDeath
BDNCD	ELynx.Distribution.BirthDeathNearlyCritical
bdncdLa	ELynx.Distribution.BirthDeathNearlyCritical
bdncdMu	ELynx.Distribution.BirthDeathNearlyCritical
bdncdTOr	ELynx.Distribution.BirthDeathNearlyCritical
Bipartition	ELynx.Data.Tree.Bipartition
bipartitions	ELynx.Data.Tree.Bipartition
bipartitionsCombined	ELynx.Data.Tree.Bipartition
bipartitionToBranch	ELynx.Data.Tree.Bipartition
BirthDeathCriticalDistribution	ELynx.Distribution.BirthDeathCritical
BirthDeathCriticalNoTimeDistribution	ELynx.Distribution.BirthDeathCriticalNoTime
BirthDeathDistribution	ELynx.Distribution.BirthDeath
BirthDeathNearlyCriticalDistribution	ELynx.Distribution.BirthDeathNearlyCritical
bp	ELynx.Data.Tree.Bipartition
bpmap	ELynx.Data.Tree.Bipartition
branchLength	ELynx.Import.Tree.Newick
branchScoreDistance	ELynx.Data.Tree.Distance
branchScoreDistanceWith	ELynx.Data.Tree.Distance
BranchSupport	ELynx.Data.Tree.BranchSupportTree
BranchSupportLabel	ELynx.Data.Tree.BranchSupportTree
BrLnNChildren	ELynx.Data.Tree.SumStat
coalescentDistributionCont	ELynx.Distribution.CoalescentContinuous
collapse	ELynx.Data.Tree.BranchSupportTree
computeAdjacentDistances	ELynx.Data.Tree.Distance
computePairwiseDistances	ELynx.Data.Tree.Distance
cumulative
1 (Function)	ELynx.Distribution.TimeOfOriginNearCritical
2 (Function)	ELynx.Distribution.TimeOfOrigin
3 (Function)	ELynx.Distribution.BirthDeathNearlyCritical
4 (Function)	ELynx.Distribution.BirthDeathCriticalNoTime
5 (Function)	ELynx.Distribution.BirthDeathCritical
6 (Function)	ELynx.Distribution.BirthDeath
degree	ELynx.Data.Tree.Tree
density
1 (Function)	ELynx.Distribution.TimeOfOriginNearCritical
2 (Function)	ELynx.Distribution.TimeOfOrigin
3 (Function)	ELynx.Distribution.BirthDeathNearlyCritical
4 (Function)	ELynx.Distribution.BirthDeathCriticalNoTime
5 (Function)	ELynx.Distribution.BirthDeathCritical
6 (Function)	ELynx.Distribution.BirthDeath
distancesRootLeaves	ELynx.Data.Tree.MeasurableTree
EvoLabel	ELynx.Data.Tree.EvoTree
extant	ELynx.Data.Tree.EvoTree
external	ELynx.Data.Tree.EvoTree
extinct	ELynx.Data.Tree.EvoTree
forest	ELynx.Import.Tree.Newick
formatNChildSumStat	ELynx.Data.Tree.SumStat
getBranchSupport	ELynx.Data.Tree.BranchSupportTree
getLen	ELynx.Data.Tree.MeasurableTree
getName	ELynx.Data.Tree.NamedTree
height	ELynx.Data.Tree.MeasurableTree
incompatibleSplitsDistance	ELynx.Data.Tree.Distance
incompatibleSplitsDistanceWith	ELynx.Data.Tree.Distance
internal	ELynx.Data.Tree.EvoTree
leaf	ELynx.Import.Tree.Newick
leaves	ELynx.Data.Tree.Tree
lengthen	ELynx.Data.Tree.MeasurableTree
lengthenRoot	ELynx.Data.Tree.MeasurableTree
manyNewick	ELynx.Import.Tree.Newick
Measurable	ELynx.Data.Tree.MeasurableTree
merge	ELynx.Data.Tree.Tree
name	ELynx.Import.Tree.Newick
Named	ELynx.Data.Tree.NamedTree
NChildSumStat	ELynx.Data.Tree.SumStat
newick	ELynx.Import.Tree.Newick
node	ELynx.Import.Tree.Newick
normalize
1 (Function)	ELynx.Data.Tree.BranchSupportTree
2 (Function)	ELynx.Data.Tree.MeasurableTree
nSubSamples	ELynx.Data.Tree.Tree
origin	ELynx.Simulate.PointProcess
Parser	ELynx.Import.Tree.Newick
pBrLen	ELynx.Data.Tree.PhyloTree
pBrSup	ELynx.Data.Tree.PhyloTree
PhyloByteStringLabel	ELynx.Data.Tree.PhyloTree
PhyloIntLabel	ELynx.Data.Tree.PhyloTree
PhyloLabel
1 (Type/Class)	ELynx.Data.Tree.PhyloTree
2 (Data Constructor)	ELynx.Data.Tree.PhyloTree
pLabel	ELynx.Data.Tree.PhyloTree
PointProcess
1 (Type/Class)	ELynx.Simulate.PointProcess
2 (Data Constructor)	ELynx.Simulate.PointProcess
points	ELynx.Simulate.PointProcess
prune	ELynx.Data.Tree.MeasurableTree
pruneWith	ELynx.Data.Tree.Tree
quantile
1 (Function)	ELynx.Distribution.TimeOfOriginNearCritical
2 (Function)	ELynx.Distribution.TimeOfOrigin
3 (Function)	ELynx.Distribution.BirthDeathNearlyCritical
4 (Function)	ELynx.Distribution.BirthDeathCriticalNoTime
5 (Function)	ELynx.Distribution.BirthDeathCritical
6 (Function)	ELynx.Distribution.BirthDeath
Rate	ELynx.Distribution.Types
removeBrLen	ELynx.Data.Tree.PhyloTree
setBranchSupport	ELynx.Data.Tree.BranchSupportTree
setLen	ELynx.Data.Tree.MeasurableTree
shorten	ELynx.Data.Tree.MeasurableTree
shortenRoot	ELynx.Data.Tree.MeasurableTree
simulate
1 (Function)	ELynx.Simulate.Coalescent
2 (Function)	ELynx.Simulate.PointProcess
simulateNReconstructedTrees	ELynx.Simulate.PointProcess
simulateReconstructedTree	ELynx.Simulate.PointProcess
singleton	ELynx.Data.Tree.Tree
subSample	ELynx.Data.Tree.Tree
subTree	ELynx.Data.Tree.Tree
summarize	ELynx.Data.Tree.MeasurableTree
symmetricDistance	ELynx.Data.Tree.Distance
symmetricDistanceWith	ELynx.Data.Tree.Distance
Time	ELynx.Distribution.Types
TimeOfOriginDistribution	ELynx.Distribution.TimeOfOrigin
TimeOfOriginNearCriticalDistribution	ELynx.Distribution.TimeOfOriginNearCritical
TimeSpec	ELynx.Simulate.PointProcess
TOD	ELynx.Distribution.TimeOfOrigin
todLa
1 (Function)	ELynx.Distribution.TimeOfOriginNearCritical
2 (Function)	ELynx.Distribution.TimeOfOrigin
todMu
1 (Function)	ELynx.Distribution.TimeOfOriginNearCritical
2 (Function)	ELynx.Distribution.TimeOfOrigin
todTN
1 (Function)	ELynx.Distribution.TimeOfOriginNearCritical
2 (Function)	ELynx.Distribution.TimeOfOrigin
TONCD	ELynx.Distribution.TimeOfOriginNearCritical
toNChildSumStat	ELynx.Data.Tree.SumStat
toNewick	ELynx.Export.Tree.Newick
toReconstructedTree	ELynx.Simulate.PointProcess
totalBranchLength	ELynx.Data.Tree.MeasurableTree
tZipWith	ELynx.Data.Tree.Tree
values	ELynx.Simulate.PointProcess