fasta-0.5.1.3: A simple, mindless parser for fasta files.

Safe HaskellSafe-Inferred
LanguageHaskell98

Data.Fasta.Text.Lazy.Parse

Description

Collection of functions for the parsing of a fasta file. Uses the lazy Text type.

Synopsis

Documentation

parseFasta :: Text -> [FastaSequence] Source

Parse a standard fasta file into lazy text sequences

parseCLIPFasta :: Text -> CloneMap Source

Parse a CLIP fasta file into lazy text sequences

removeNs :: [FastaSequence] -> [FastaSequence] Source

Remove Ns from a collection of sequences

removeCLIPNs :: CloneMap -> CloneMap Source

Remove Ns from a collection of CLIP fasta sequences