The flower package

[Tags: gpl, program]

flower - FLOWgram ExtractoR tools

The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format.

The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.

Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.

The Darcs repository is at http://malde.org/~ketil/biohaskell/flower.


Properties

Versions0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2
Dependenciesarray (>=0.1), base (>=3 && <5), binary (==0.4.*), bio (>=0.4.2), bytestring (>=0.9.1), cmdargs, containers, random
LicenseGPL
AuthorKetil Malde
MaintainerKetil Malde <ketil@malde.org>
CategoryBioinformatics
Home pagehttp://malde.org/~ketil/biohaskell/flower
Executablesflowt, frename, frecover, flowselect, flower
Upload dateTue Jul 20 14:06:32 UTC 2010
Uploaded byKetilMalde
Downloads1181 total (113 in last 30 days)

Downloads

Maintainers' corner

For package maintainers and hackage trustees