The flower package

[Tags: gpl, program]

flower - FLOWgram ExtractoR tools

The flower executable reads files in SFF-format and produces various output, including sequences with quality, or flowgram data in tabular format. By default, it outputs a textual representation of the data in the SFF-file, much like sffinfo from Roche does.

The fselect executable extracts reads from SFF-files, generating a new SFF-file with a subset of the reads based on various criteria.

Sometimes SFF files will appear to be corrupted, with all-zero blocks in the file. The frecover program ignores these and tries to resync with the file after an invalid region. This was likely a one-time bug in the 454 software, so this program is probably not so useful any more.


Properties

Versions0.1, 0.1.1, 0.1.2, 0.2, 0.3, 0.4, 0.5, 0.6, 0.6.1, 0.6.3, 0.6.5, 0.7, 0.7.2
Dependenciesarray (>=0.1), base (>=3 && <5), binary (==0.4.*), bio (>=0.4.9), bytestring (>=0.9.1), cmdargs (>=0.5), containers, mtl, random
LicenseGPL
AuthorKetil Malde
MaintainerKetil Malde <ketil@malde.org>
CategoryBioinformatics
Home pagehttp://biohaskell.org/Applications/Flower
Executablesflowt, frename, frecover, flowselect, flower
Upload dateTue Jan 25 23:09:20 UTC 2011
Uploaded byKetilMalde
Downloads923 total (69 in last 30 days)

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