Name:           flower
Version:        0.7
License:        GPL
Cabal-Version:  >= 1.6
Author:         Ketil Malde
Maintainer:     Ketil Malde <ketil@malde.org>

Category:       Bioinformatics
Synopsis:       Analyze 454 flowgrams  (.SFF files)
Description:    flower - FLOWgram ExtractoR tools
                .
                The flower executable reads files in SFF-format and produces various output, 
                including sequences with quality, or flowgram data in tabular format.  By default,
                it outputs a textual representation of the data in the SFF-file, much like
                'sffinfo' from Roche does.
                .
                The fselect executable extracts reads from SFF-files, generating a new
                SFF-file with a subset of the reads based on various criteria.
                .
                Sometimes SFF files will appear to be corrupted, with all-zero blocks in the
                file. The frecover program ignores these and tries to resync with the file after an 
                invalid region.  This was likely a one-time bug in the 454 software, so this program
                is probably not so useful any more.

HomePage:       http://biohaskell.org/Applications/Flower
-- Source-Repository: http//malde.org/~ketil/biohaskell/flower
Build-Type:     Simple
Tested-with:    GHC==6.8.3, GHC==6.12.1
Extra-Source-Files:  test.sh

-- Data-files:     README
Executable     flower
    Main-Is:        Flower.hs
    Other-Modules:  Print, Metrics, Options, Fork
    Hs-Source-Dirs: src
    Ghc-Options:    -Wall -threaded
    Build-Depends:  bio >= 0.4.9, base >=3 && <5, array >= 0.1, bytestring >= 0.9.1, binary == 0.4.*, random, cmdargs >= 0.5, containers, mtl

Executable     flowselect
    Main-Is:        FlowSelect.hs
    Other-Modules:  Metrics
    Hs-Source-Dirs: src
    Ghc-Options:    -Wall
    Build-Depends:  bio >= 0.4.9, random, base >= 3 && < 5
    Extensions:     ExistentialQuantification

Executable     frecover
    Main-Is:        FRecover.hs
    Hs-Source-Dirs: src
    Build-Depends:  bio >= 0.4.9, base >= 3 && < 5
    Ghc-Options:    -Wall

Executable     frename
    Main-Is:        FRename.hs
    Hs-Source-Dirs: src
    Build-Depends:  bio >= 0.4.9, base >= 3 && < 5, bytestring >= 0.9.1
    Ghc-Options:    -Wall

Executable     flowt
    Main-Is:        Flowt.hs
    Hs-Source-Dirs: src
    if impl(ghc >= 6.12)
      Ghc-Options:     -Wall -fno-warn-unused-do-bind
    else
      Ghc-Options:     -Wall
    Build-Depends:  bio >= 0.4.9, base >= 3 && < 5, cmdargs >= 0.5, containers, bytestring >= 0.9.1
    Extensions:     DeriveDataTypeable