I checked in my music collection into git annex (about 25000 files) and i'm really impressed by the performance of git annex (after i've done an git-repack). Now i'm also moving my movies into the same git-annex, but i have the following layout of my disk drives: * small raid-1 for important stuff (music, documents), which is also backupped (aka: raid) * big bulk data store (aka: media) In the git-annex the following layout of files is used: * documents/ <- on raid * music/ <- on raid * videos/ <- on media Now i didn't simply clone the raid-annex to media, but did an sparse-checkout (possible since version 1.7.0) * raid: .git-annex/, documents/ and music * media: .git-annex/, videos/ As you can see i have to checkout the .git-annex directory with the file-logs twice which slows down git operations. Everything else works fine until now. git-annex doesn't have any problem, that only a part of the symlinks are present, which is really great. Is there a possibility to sparse checkout the .git-annex directory also? Perhaps splitting the log files in .git-annex/ into N subfolders, corresponding to the toplevel subfolders, like this? Before: $ ls .git-annex 00 01 02.... After: $ ls .git-annex documents/ music/ videos/ $ ls .git-annex/documents 00 01 02.... This would make it possible to checkout only the part of the log files which i'm interested in.