What steps will reproduce the problem? Add a rsync special remote - one that you need a username/password to access (stored in text file $HOME/.rsync.password): $ git annex initremote myrsync type=rsync rsyncurl=rsync://username@rsync.example.com/myrsync encryption=none $ git annex describe myrsync "rsync server" $ git config remote.myrsync.annex-rsync-options "--password-file=$HOME/.rsync.password" Copy a file to the remote: $ git annex -d copy my-file --to myrsync What is the expected output? What do you see instead? Expect to see the file copied over to the rsync remote, but the check doesn't use the annex-rsync-options and asks for a password. The debug output is: copy my-file (checking myrsync...) [2012-10-28 01:01:01 EST] call: sh ["-c","rsync --quiet 'rsync://username@rsync.example.com/myrsync/[...SNIP...]' 2>/dev/null"] However the actual copy does use annex-rsync-options and the copy works: [2012-10-28 01:01:05 EST] read: rsync ["--password-file=/home/blah/.rsync.password","--progress","--recursive","--partial","--partial-dir=.rsync-partial","/home/blah/annex/.git/annex/tmp/rsynctmp/12345/","rsync://username@rsync.example.com/myrsync"] What version of git-annex are you using? On what operating system? git-annex: 3.20121017 OS: Ubuntu 12.04 Please provide any additional information below. I think this fix is as easy as including the annex-rsync-options wherever rsync is called. > I belive there was only the one place this was neglected. [[done]] > --[[Joey]]