I've done a `git annex add` and `git commit` on my annex which included some files I don't want to add to the annex. I've tried to reverse it all out, but whenever I `git annex add` something, the unwanted files show up in the git-annex branch. git init forgetmenot cd forgetmenot git commit -m "create" --allow-empty git annex init fmn echo 'foo' > foo echo 'bar' > bar git annex add git commit -m "add foo" git log --oneline --name-only # 28634c0 add foo # bar # foo # 4a87050 create git log --oneline --name-only git-annex 74e6969 update 41d/a26/SHA256E-s4--b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c.log a70/4a5/SHA256E-s4--7d865e959b2466918c9863afca942d0fb89d7c9ac0c99bafc3749504ded97730.log 95285ed update uuid.log 2135e07 branch created If you now try to get git-annex to forget by reverting *master* and *git-annex* and only adding/commiting *foo*, the master branch ends up correct, but git-annex magically remembers *bar*! git reset --hard HEAD^ git branch -f git-annex git-annex^ echo 'foo' > foo git annex add git commit -m "add foo" git log --oneline --name-only # 1b4889e add foo # foo # 4a87050 create git log --oneline --name-only git-annex # 3d0b9bc update # 41d/a26/SHA256E-s4--b5bb9d8014a0f9b1d61e21e796d78dccdf1352f23cd32812f4850b878ae4944c.log # a70/4a5/SHA256E-s4--7d865e959b2466918c9863afca942d0fb89d7c9ac0c99bafc3749504ded97730.log # 2e17a19 update # uuid.log # 646776b branch created How is git-annex remembering this and how can I get it to completely forget? I have tried `git gc --aggressive --prune=all`, `git annex fsck --all` and `git annex drop unused` but somehow, git-annex is remembering bar existed. This is an exercise in micro-managing the git-annex branch a bit, but this situation does also cause git-annex to complain about the missing files on fsck (0 out of 2 copies) so it isn't just being a control freak! Honest! :)