### Please describe the problem.
I’ve noticed a repo in which I’m running the assistant wouldn’t push updates to its remote anymore. Inspecting the assistant log revealed that there was a problem with the index used for the git-annex branch. After deleting the index file, the assistant could sync to the remote again. (Could deleting the annex index have introduced any inconsistencies into the git-annex branch?)

### What steps will reproduce the problem?
Uncertain. However, I made a copy of .git/annex/index and can reproduce the error by cloning my original repo, checking out the git-annex branch, copying in the backed-up index file and doing git write-tree, which then yields an invalid object error.

It looks like the respective object isn’t present in the git object store. The error is for b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8, but no directory .git/objects/b5 exists (even after unpacking packed objects).

I could supply you with the index file; do you need anything else? If I don’t clone from my repo, I obviously get an invalid object for everything; should I supply you with a git-bundle of the git-annex ref?

### What version of git-annex are you using? On what operating system?
git-annex 5.20150508-1
Linux 4.0.5

### Please provide any additional information below.

Below is the daemon.log* concatenated, starting with the earliest one. Grep for “invalid object” or “write tree”.

[[!format sh """
[2015-06-05 16:59:45 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-05 16:59:45 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-05 16:59:57 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-05 16:59:57 CEST] Watcher: Performing startup scan
(started...) [2015-06-05 16:59:58 CEST] RemoteControl: Syncing with origin 
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-05 16:59:58 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
[2015-06-05 16:59:59 CEST] Committer: Committing changes to git
[2015-06-05 16:59:59 CEST] Pusher: Syncing with origin 
error: Unable to create '/home/seb/Annex/.git/refs/remotes/origin/master.lock': File exists.

If no other git process is currently running, this probably means a
git process crashed in this repository earlier. Make sure no other git
process is running and remove the file manually to continue.
error: Cannot lock the ref 'refs/remotes/origin/master'.
From ssh://redacted.net/srv/git/seb/annex/annex
 ! d71a4e0..1f265ec  master     -> origin/master  (unable to update local ref)
From ssh://redacted.net/srv/git/seb/annex/annex
   d71a4e0..1f265ec  master     -> origin/master
error: Unable to create '/home/seb/Annex/.git/refs/remotes/origin/git-annex.lock': File exists.

If no other git process is currently running, this probably means a
git process crashed in this repository earlier. Make sure no other git
process is running and remove the file manually to continue.
error: Cannot lock the ref 'refs/remotes/origin/git-annex'.
 ! 33446d6..973fbda  git-annex  -> origin/git-annex  (unable to update local ref)
   33446d6..973fbda  git-annex  -> origin/git-annex
error: Unable to create '/home/seb/Annex/.git/refs/remotes/origin/synced/git-annex.lock': File exists.

If no other git process is currently running, this probably means a
git process crashed in this repository earlier. Make sure no other git
process is running and remove the file manually to continue.
error: Cannot lock the ref 'refs/remotes/origin/synced/git-annex'.
 ! 33446d6..973fbda  synced/git-annex -> origin/synced/git-annex  (unable to update local ref)
   d71a4e0..1f265ec  synced/master -> origin/synced/master
   33446d6..973fbda  synced/git-annex -> origin/synced/git-annex
error: Ref refs/remotes/origin/synced/master is at 1f265ecc6288ead453681794551c527f64660f8c but expected d71a4e027cdd61c1323fbdc67103dde97f613192
error: Cannot lock the ref 'refs/remotes/origin/synced/master'.
 ! d71a4e0..1f265ec  synced/master -> origin/synced/master  (unable to update local ref)
Updating d71a4e0..1f265ec
Fast-forward
 org/software/software.org | 4 +++-
 org/software/theming.org  | 7 +++++++
 2 files changed, 10 insertions(+), 1 deletion(-)
Already up-to-date.
To ssh://redacted.net/srv/git/seb/annex/annex.git
 + 973fbda...33446d6 git-annex -> synced/git-annex (forced update)
 ! [rejected]        master -> synced/master (non-fast-forward)
error: failed to push some refs to 'ssh://redacted.net/srv/git/seb/annex/annex.git'
hint: Updates were rejected because a pushed branch tip is behind its remote
hint: counterpart. Check out this branch and integrate the remote changes
hint: (e.g. 'git pull ...') before pushing again.
hint: See the 'Note about fast-forwards' in 'git push --help' for details.
[2015-06-05 17:00:00 CEST] Committer: Committing changes to git
To ssh://redacted.net/srv/git/seb/annex/annex.git
   33446d6..973fbda  git-annex -> synced/git-annex
Everything up-to-date
[2015-06-05 17:00:05 CEST] Pusher: Syncing with origin 
Everything up-to-date
Connection to redacted.net closed by remote host.
ssh: connect to host redacted.nessh: connect to host redactedssh: connect to host redacted.n[2015-06-05 17:59:57 CEST] NetWatcherFallback: Syncing with origin 
Everything up-to-date
[2015-06-05 18:51:33 CEST] Committer: Committing changes to git
[2015-06-05 18:51:33 CEST] Pusher: Syncing with origin 
[2015-06-05 18:51:34 CEST] Committer: Committing changes to git
To ssh://redacted.net/srv/git/seb/annex/annex.git
   1f265ec..1cee9eb  master -> synced/master
[2015-06-05 18:51:37 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 19:00:01 CEST] NetWatcherFallback: Syncing with origin 
Everything up-to-date
packet_write_wait: Connection to 37.221.198.119: Broken pipe
[2015-06-05 20:00:03 CEST] NetWatcherFallback: Syncing with origin 
Everything up-to-date
[2015-06-05 20:13:01 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-05 20:13:01 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-05 20:13:12 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-05 20:13:12 CEST] Watcher: Performing startup scan
(started...) gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-05 20:13:13 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
Everything up-to-date
[2015-06-05 20:13:14 CEST] Committer: Committing changes to git
[2015-06-05 20:13:14 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 21:13:12 CEST] NetWatcherFallback: Syncing with origin 
Everything up-to-date
[2015-06-05 22:13:14 CEST] NetWatcherFallback: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:04 CEST] Committer: Committing changes to git
[2015-06-05 22:33:04 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:08 CEST] Committer: Committing changes to git
[2015-06-05 22:33:08 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:11 CEST] Committer: Committing changes to git
[2015-06-05 22:33:11 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:14 CEST] Committer: Committing changes to git
[2015-06-05 22:33:14 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:16 CEST] Committer: Committing changes to git
[2015-06-05 22:33:18 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:20 CEST] Committer: Committing changes to git
[2015-06-05 22:33:21 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:27 CEST] Committer: Committing changes to git
[2015-06-05 22:33:27 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:28 CEST] Committer: Committing changes to git
[2015-06-05 22:33:30 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:37 CEST] Committer: Committing changes to git
[2015-06-05 22:33:37 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:33:43 CEST] Committer: Committing changes to git
[2015-06-05 22:33:43 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 22:34:12 CEST] Committer: Committing changes to git
[2015-06-05 22:34:12 CEST] Pusher: Syncing with origin 
[2015-06-05 22:34:13 CEST] Committer: Committing changes to git
To ssh://redacted.net/srv/git/seb/annex/annex.git
   1cee9eb..46828df  master -> synced/master
[2015-06-05 22:34:15 CEST] Pusher: Syncing with origin 
To ssh://redacted.net/srv/git/seb/annex/annex.git
   46828df..8e93c98  master -> synced/master
[2015-06-05 22:34:23 CEST] Committer: Committing changes to git
[2015-06-05 22:34:23 CEST] Pusher: Syncing with origin 
To ssh://redacted.net/srv/git/seb/annex/annex.git
   8e93c98..9bed0e6  master -> synced/master
[2015-06-05 22:34:24 CEST] Committer: Committing changes to git
[2015-06-05 22:34:27 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 23:04:49 CEST] Committer: Committing changes to git
[2015-06-05 23:04:49 CEST] Pusher: Syncing with origin 
To ssh://redacted.net/srv/git/seb/annex/annex.git
   9bed0e6..ec8f2c4  master -> synced/master
[2015-06-05 23:04:50 CEST] Committer: Committing changes to git
[2015-06-05 23:04:52 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 23:11:39 CEST] Committer: Committing changes to git
[2015-06-05 23:11:39 CEST] Pusher: Syncing with origin 
To ssh://redacted.net/srv/git/seb/annex/annex.git
   ec8f2c4..14bc26a  master -> synced/master
[2015-06-05 23:11:40 CEST] Committer: Committing changes to git
[2015-06-05 23:11:43 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 23:13:16 CEST] NetWatcherFallback: Syncing with origin 
Everything up-to-date
[2015-06-05 23:33:28 CEST] Committer: Committing changes to git
[2015-06-05 23:33:28 CEST] Pusher: Syncing with origin 
To ssh://redacted.net/srv/git/seb/annex/annex.git
   14bc26a..bd150f5  master -> synced/master
[2015-06-05 23:33:29 CEST] Committer: Committing changes to git
[2015-06-05 23:33:32 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 23:34:09 CEST] Committer: Committing changes to git
[2015-06-05 23:34:09 CEST] Pusher: Syncing with origin 
To ssh://redacted.net/srv/git/seb/annex/annex.git
   bd150f5..290c21c  master -> synced/master
[2015-06-05 23:34:10 CEST] Committer: Committing changes to git
[2015-06-05 23:34:12 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 23:34:15 CEST] Committer: Committing changes to git
[2015-06-05 23:34:15 CEST] Pusher: Syncing with origin 
[2015-06-05 23:34:16 CEST] Committer: Committing changes to git
To ssh://redacted.net/srv/git/seb/annex/annex.git
   290c21c..a56091f  master -> synced/master
[2015-06-05 23:34:19 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-05 23:35:17 CEST] Committer: Committing changes to git
[2015-06-05 23:35:17 CEST] Pusher: Syncing with origin 
[2015-06-05 23:35:18 CEST] Committer: Committing changes to git
To ssh://redacted.net/srv/git/seb/annex/annex.git
   a56091f..2fb635b  master -> synced/master
[2015-06-05 23:35:21 CEST] Pusher: Syncing with origin 
Everything up-to-date

(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)
(recording state in git...)

  lost dbus connection; falling back to polling (ClientError {clientErrorMessage = "Error reading message from socket: UnmarshalError \"Unexpected end of input while parsing message header.\"", clientErrorFatal = True})

  dbus failed; falling back to mtab polling (ClientError {clientErrorMessage = "Error reading message from socket: UnmarshalError \"Unexpected end of input while parsing message header.\"", clientErrorFatal = True})
[2015-06-06 07:17:17 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-06 07:17:17 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-06 07:17:25 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-06 07:17:30 CEST] Watcher: Performing startup scan
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-06 07:17:32 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
Everything up-to-date
(started...) [2015-06-06 07:17:36 CEST] Committer: Committing changes to git
[2015-06-06 07:17:36 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-06 07:45:05 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-06 07:45:05 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-06 07:45:10 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-06 07:45:10 CEST] Watcher: Performing startup scan
(started...) /usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-06 07:45:12 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
[2015-06-06 07:45:12 CEST] Committer: Committing changes to git
[2015-06-06 07:45:12 CEST] Pusher: Syncing with origin 
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
Everything up-to-date
Everything up-to-date
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync

(recording state in git...)

  bugs/nouveau-bug/nouveau.log.8 still has writers, not adding
[2015-06-06 07:47:04 CEST] Committer: Adding nouveau.log.8
add bugs/nouveau-bug/nouveau.log.8 [2015-06-06 07:47:04 CEST] Committer: Committing changes to git
[2015-06-06 07:47:04 CEST] Pusher: Syncing with origin 
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
Pusher crashed: failed to read sha from git write-tree
[2015-06-06 07:47:04 CEST] Pusher: warning Pusher crashed: failed to read sha from git write-tree
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'recvkey' '/srv/git/seb/annex/annex.git' 'SHA256E-s4491--e35540a06d6839455b48ecd8f2a4c7714d420379bae55a7b383dc1a5dc60d8e0.log.8' --uuid a2131774-31b2-47d2-9185-b2e344c16134 '--' 'remoteuuid=1dda4b9a-1ff2-4a9b-aaf8-47dfdd02c8ae' 'direct=' 'associatedfile=bugs/nouveau-bug/nouveau.log.8' '--' dummy rsync --server -pe.Lsfx --log-format=X --inplace . .' is not rsync
rsync: connection unexpectedly closed (0 bytes received so far) [sender]
rsync error: unexplained error (code 255) at io.c(226) [sender=3.1.1]
[2015-06-06 07:47:05 CEST] Committer: Committing changes to git
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'recvkey' '/srv/git/seb/annex/annex.git' 'SHA256E-s4491--e35540a06d6839455b48ecd8f2a4c7714d420379bae55a7b383dc1a5dc60d8e0.log.8' --uuid a2131774-31b2-47d2-9185-b2e344c16134 '--' 'remoteuuid=1dda4b9a-1ff2-4a9b-aaf8-47dfdd02c8ae' 'direct=' 'associatedfile=bugs/nouveau-bug/nouveau.log.8' '--' dummy rsync --server -pe.Lsfx --log-format=X --inplace . .' is not rsync
rsync: connection unexpectedly closed (0 bytes received so far) [sender]
rsync error: unexplained error (code 255) at io.c(226) [sender=3.1.1]
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
/usr/lib/rsync/rrsync: SSH_ORIGINAL_COMMAND='git-annex-shell 'notifychanges' '/srv/git/seb/annex/annex.git' --uuid a2131774-31b2-47d2-9185-b2e344c16134' is not rsync
[2015-06-06 08:45:10 CEST] NetWatcherFallback: Syncing with origin 
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
NetWatcherFallback crashed: failed to read sha from git write-tree
[2015-06-06 08:45:12 CEST] NetWatcherFallback: warning NetWatcherFallback crashed: failed to read sha from git write-tree
[2015-06-06 15:58:38 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-06 15:58:38 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-06 15:58:44 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-06 15:58:44 CEST] Watcher: Performing startup scan
(started...) gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-06 15:58:45 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
TransferScanner crashed: failed to read sha from git write-tree
[2015-06-06 15:58:45 CEST] TransferScanner: warning TransferScanner crashed: failed to read sha from git write-tree
[2015-06-06 15:58:46 CEST] Committer: Committing changes to git
[2015-06-06 15:58:46 CEST] Pusher: Syncing with origin 
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
Pusher crashed: failed to read sha from git write-tree
[2015-06-06 15:58:46 CEST] Pusher: warning Pusher crashed: failed to read sha from git write-tree
[2015-06-06 16:58:44 CEST] NetWatcherFallback: Syncing with origin 
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
NetWatcherFallback crashed: failed to read sha from git write-tree
[2015-06-06 16:58:47 CEST] NetWatcherFallback: warning NetWatcherFallback crashed: failed to read sha from git write-tree
[2015-06-06 18:10:24 CEST] Committer: Committing changes to git
[2015-06-06 18:10:25 CEST] Committer: Committing changes to git
[2015-06-06 20:01:34 CEST] Committer: Committing changes to git
[2015-06-06 20:01:35 CEST] Committer: Committing changes to git
[2015-06-06 22:42:41 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-06 22:42:41 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-06 22:42:47 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-06 22:42:47 CEST] Watcher: Performing startup scan
(started...) error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
TransferScanner crashed: failed to read sha from git write-tree
[2015-06-06 22:42:48 CEST] TransferScanner: warning TransferScanner crashed: failed to read sha from git write-tree
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-06 22:42:48 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
[2015-06-06 22:42:49 CEST] Committer: Committing changes to git
[2015-06-06 22:42:49 CEST] Pusher: Syncing with origin 
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
Pusher crashed: failed to read sha from git write-tree
[2015-06-06 22:42:49 CEST] Pusher: warning Pusher crashed: failed to read sha from git write-tree

(recording state in git...)
(recording state in git...)
(recording state in git...)

  bugs/nouveau-bug/nouveau.log.9 still has writers, not adding
[2015-06-06 22:43:47 CEST] Committer: Adding nouveau.log.9
add bugs/nouveau-bug/nouveau.log.9 [2015-06-06 22:43:48 CEST] Committer: Committing changes to git

SHA256E-s4427--4e02ba661d0106ff4715a2cfda0fe39185865551bcb484539e618f2b64f9ec0c.log.9

          4,427 100%    0.00kB/s    0:00:00  
          4,427 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-06 22:43:48 CEST] Transferrer: Uploaded nouveau.log.9
[2015-06-06 22:43:49 CEST] Committer: Committing changes to git
ok
(recording state in git...)

  lost dbus connection; falling back to polling (ClientError {clientErrorMessage = "Error reading message from socket: UnmarshalError \"Unexpected end of input while parsing message header.\"", clientErrorFatal = True})
[2015-06-07 07:41:35 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-07 07:41:35 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-07 07:41:42 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-07 07:41:42 CEST] Watcher: Performing startup scan
(started...) error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
TransferScanner crashed: failed to read sha from git write-tree
[2015-06-07 07:41:43 CEST] TransferScanner: warning TransferScanner crashed: failed to read sha from git write-tree
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-07 07:41:43 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
[2015-06-07 07:41:44 CEST] Committer: Committing changes to git
[2015-06-07 07:41:44 CEST] Pusher: Syncing with origin 
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
Pusher crashed: failed to read sha from git write-tree
[2015-06-07 07:41:44 CEST] Pusher: warning Pusher crashed: failed to read sha from git write-tree
[2015-06-07 08:41:42 CEST] NetWatcherFallback: Syncing with origin 
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
NetWatcherFallback crashed: failed to read sha from git write-tree
[2015-06-07 08:41:43 CEST] NetWatcherFallback: warning NetWatcherFallback crashed: failed to read sha from git write-tree
[2015-06-07 09:21:46 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-07 09:21:46 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-07 09:21:49 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-07 09:21:49 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-07 09:21:54 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-07 09:21:55 CEST] Watcher: Performing startup scan
(started...) 
(recording state in git...)
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
TransferScanner crashed: failed to read sha from git write-tree
[2015-06-07 09:21:55 CEST] TransferScanner: warning TransferScanner crashed: failed to read sha from git write-tree
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-07 09:21:56 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
[2015-06-07 09:21:56 CEST] Committer: Committing changes to git
(recording state in git...)
[2015-06-07 09:21:56 CEST] Pusher: Syncing with origin 
(recording state in git...)
error: invalid object 100644 b5f693aa67b6d185e6d967e0a45c3c57a4f4b4a8 for '88c/df4/SHA256E-s4644--eca6d831c0a94895a81296327bc21bdf417234c7ebfa3e93fd21a71523ac9da9.log.6.log'
fatal: git-write-tree: error building trees
Pusher crashed: failed to read sha from git write-tree
[2015-06-07 09:21:57 CEST] Pusher: warning Pusher crashed: failed to read sha from git write-tree
[2015-06-07 09:23:07 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-07 09:23:07 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-07 09:23:12 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-07 09:23:12 CEST] Watcher: Performing startup scan
(started...) 
(recording state in git...)
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-07 09:23:13 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
[2015-06-07 09:23:14 CEST] Committer: Committing changes to git
(recording state in git...)
[2015-06-07 09:23:14 CEST] Pusher: Syncing with origin 

SHA256E-s4491--e35540a06d6839455b48ecd8f2a4c7714d420379bae55a7b383dc1a5dc60d8e0.log.8

          4,491 100%    0.00kB/s    0:00:00  
          4,491 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:23:15 CEST] Transferrer: Uploaded nouveau.log.8
error: Unable to create '/srv/git/seb/annex/annex.git/refs/heads/synced/git-annex.lock': File exists.

If no other git process is currently running, this probably means a
git process crashed in this repository earlier. Make sure no other git
process is running and remove the file manually to continue.
remote: error: Cannot lock the ref 'refs/heads/synced/git-annex'.        
error: Unable to create '/srv/git/seb/annex/annex.git/refs/heads/synced/master.lock': File exists.

If no other git process is currently running, this probably means a
git process crashed in this repository earlier. Make sure no other git
process is running and remove the file manually to continue.
remote: error: Cannot lock the ref 'refs/heads/synced/master'.        
To ssh://redacted.net/srv/git/seb/annex/annex.git
   aec4d80..5cac670  master -> synced/master
 ! [remote rejected] git-annex -> synced/git-annex (failed to update ref)
To ssh://redacted.net/srv/git/seb/annex/annex.git
   973fbda..118a888  git-annex -> synced/git-annex
 ! [remote rejected] master -> synced/master (failed to update ref)
error: failed to push some refs to 'ssh://redacted.net/srv/git/seb/annex/annex.git'
error: failed to push some refs to 'ssh://redacted.net/srv/git/seb/annex/annex.git'
error: Ref refs/remotes/origin/master is at 5cac670bc3d15a2d1a976ab02b2717078717ad48 but expected aec4d80548993b2b6e126124153fab9c93de8375
error: Cannot lock the ref 'refs/remotes/origin/master'.
From ssh://redacted.net/srv/git/seb/annex/annex
 ! aec4d80..5cac670  master     -> origin/master  (unable to update local ref)
error: Ref refs/remotes/origin/git-annex is at 118a888e0244e644c2ec6c0bf100e787d25a222d but expected 973fbdad6d8b549c4db0633ef11fa5a8f9ec0ed1
error: Cannot lock the ref 'refs/remotes/origin/git-annex'.
 ! 973fbda..118a888  git-annex  -> origin/git-annex  (unable to update local ref)
Everything up-to-date
Everything up-to-date
(recording state in git...)
[2015-06-07 09:23:20 CEST] main: starting assistant version 5.20150508-g883d57f
[2015-06-07 09:23:20 CEST] Cronner: You should enable consistency checking to protect your data. 
[2015-06-07 09:23:25 CEST] TransferScanner: Syncing with origin 

  No known network monitor available through dbus; falling back to polling
(scanning...) [2015-06-07 09:23:25 CEST] Watcher: Performing startup scan
(started...) 
From ssh://redacted.net/srv/git/seb/annex/annex
   118a888..e058e35  git-annex  -> origin/git-annex
(merging origin/git-annex into git-annex...)
(recording state in git...)
gpg: assuming signed data in '/tmp/git-annex.tmp.0/info'
gpg: Signature made Thu May 28 19:01:58 2015 CEST using DSA key ID 89C809CB
gpg: /tmp/git-annex-gpg.tmp.0/trustdb.gpg: trustdb created
gpg: Good signature from "git-annex distribution signing key (for Joey Hess) <id@joeyh.name>" [unknown]
gpg: WARNING: This key is not certified with a trusted signature!
gpg:          There is no indication that the signature belongs to the owner.
Primary key fingerprint: 4005 5C6A FD2D 526B 2961  E78F 5EE1 DBA7 89C8 09CB
[2015-06-07 09:23:26 CEST] Upgrader: An upgrade of git-annex is available.  (version 5.20150528)
To ssh://redacted.net/srv/git/seb/annex/annex.git
   118a888..37bc288  git-annex -> synced/git-annex
[2015-06-07 09:23:27 CEST] Committer: Committing changes to git
(recording state in git...)
[2015-06-07 09:23:27 CEST] Pusher: Syncing with origin 
Everything up-to-date
[2015-06-07 09:25:21 CEST] Committer: Adding daemon.log.4
add bugs/git-annex/daemon.log.4 ok
[2015-06-07 09:25:21 CEST] Committer: Committing changes to git
(recording state in git...)
[2015-06-07 09:25:21 CEST] Pusher: Syncing with origin 
(recording state in git...)

SHA256E-s2383--66aa385819f9ba961c3b4701dd68b6d1450af08ae24428461d342be8b12784a2.log.4

          2,383 100%    0.00kB/s    0:00:00  
          2,383 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:25:21 CEST] Transferrer: Uploaded daemon.log.4
To ssh://redacted.net/srv/git/seb/annex/annex.git
   37bc288..5c63092  git-annex -> synced/git-annex
   5cac670..3a5e7d0  master -> synced/master
[2015-06-07 09:25:22 CEST] Committer: Committing changes to git
[2015-06-07 09:25:24 CEST] Pusher: Syncing with origin 
(recording state in git...)
To ssh://redacted.net/srv/git/seb/annex/annex.git
   5c63092..07a3e47  git-annex -> synced/git-annex
[2015-06-07 09:25:40 CEST] Committer: Adding index~
add bugs/git-annex/index~ ok
[2015-06-07 09:25:40 CEST] Committer: Committing changes to git
(recording state in git...)
[2015-06-07 09:25:40 CEST] Pusher: Syncing with origin 
(recording state in git...)

SHA256E-s178074--cf093bacc4367a5e86a07cb8523b183dd0a5401805dde646cf0b2b0ddc8ee282

         32,768  18%    0.00kB/s    0:00:00  
        178,074 100%   69.29MB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:25:41 CEST] Committer: Committing changes to git
[2015-06-07 09:25:41 CEST] Transferrer: Uploaded index~
To ssh://redacted.net/srv/git/seb/annex/annex.git
   07a3e47..32d41fc  git-annex -> synced/git-annex
   3a5e7d0..20e6e3c  master -> synced/master
[2015-06-07 09:25:44 CEST] Pusher: Syncing with origin 
(recording state in git...)
To ssh://redacted.net/srv/git/seb/annex/annex.git
   32d41fc..b61b73e  git-annex -> synced/git-annex
[2015-06-07 09:44:47 CEST] Committer: Adding daemon.log daemon.log.1 daemon.log.10 daemon.log.2 daemon.log.3
add bugs/git-annex/daemon.log ok
add bugs/git-annex/daemon.log.1 ok
add bugs/git-annex/daemon.log.10 ok
add bugs/git-annex/daemon.log.2 ok
add bugs/git-annex/daemon.log.3 ok
[2015-06-07 09:44:47 CEST] Committer: Committing changes to git
(recording state in git...)
[2015-06-07 09:44:47 CEST] Pusher: Syncing with origin 
(recording state in git...)

SHA256E-s3284--5784c99b359a5fdfb52f26e82165ffba54d62f9f5cd846fce25a3c6f694eb890.log

          3,284 100%    0.00kB/s    0:00:00  
          3,284 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:47 CEST] Transferrer: Uploaded daemon.log

SHA256E-s178--704e1850cab9a6b074ba2a77344199b866e9408541b83bf1ad6b3bbd23dfc54a.log.3

            178 100%    0.00kB/s    0:00:00  
            178 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:48 CEST] Transferrer: Uploaded daemon.log.3
To ssh://redacted.net/srv/git/seb/annex/annex.git
   b61b73e..854cbda  git-annex -> synced/git-annex
   20e6e3c..0d8b74a  master -> synced/master

SHA256E-s1993--7f1bec5289ebe07306bf57fb91e0dec25b1d8f5cf1efd15297815503f1290477.log.2

          1,993 100%    0.00kB/s    0:00:00  
          1,993 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:48 CEST] Committer: Committing changes to git
(recording state in git...)
[2015-06-07 09:44:48 CEST] Transferrer: Uploaded daemon.log.2

SHA256E-s4969--ff59d2458e0b43a1965258bd0064626de1a0b7f911de693a02f34fc1bcb4959a.log.10

          4,969 100%    0.00kB/s    0:00:00  
          4,969 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:48 CEST] Transferrer: Uploaded daemon.log.10

SHA256E-s3385--0e7aef46d502f1d3a583b642239cf1272b2410d5976603b65a104fc866c02e70.log.1

          3,385 100%    0.00kB/s    0:00:00  
          3,385 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:49 CEST] Transferrer: Uploaded daemon.log.1
[2015-06-07 09:44:50 CEST] Committer: Adding daemon.log.5 daemon.log.6 daemon.log.7 daemon.log.8 daemon.log.9
add bugs/git-annex/daemon.log.5 ok
add bugs/git-annex/daemon.log.6 ok
add bugs/git-annex/daemon.log.7 ok
add bugs/git-annex/daemon.log.8 ok
add bugs/git-annex/daemon.log.9 ok
[2015-06-07 09:44:50 CEST] Committer: Committing changes to git
(recording state in git...)

SHA256E-s2792--313d72ecb598b18884602babaed667b71786a0f50edd291754bac0b70c666fa9.log.5

          2,792 100%    0.00kB/s    0:00:00  
          2,792 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:50 CEST] Transferrer: Uploaded daemon.log.5

SHA256E-s6792--8aaddbb316719160b93305bc7a6698df1b2d6b0e6f3366c0fa9f7d258cf12303.log.9

          6,792 100%    0.00kB/s    0:00:00  
          6,792 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:50 CEST] Transferrer: Uploaded daemon.log.9
[2015-06-07 09:44:50 CEST] Pusher: Syncing with origin 

SHA256E-s1183--12703bbab3cd4db78fc4449b5c3dddfb82da77c9b4a750d2b7a902f3eb63547b.log.8

          1,183 100%    0.00kB/s    0:00:00  
          1,183 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
(recording state in git...)
[2015-06-07 09:44:51 CEST] Transferrer: Uploaded daemon.log.8
[2015-06-07 09:44:51 CEST] Committer: Committing changes to git
(recording state in git...)

SHA256E-s5310--51d80ffdcfdeff4e035f740de0f18afa660404fb448a72421bd7af85ae87ae6f.log.7

          5,310 100%    0.00kB/s    0:00:00  
          5,310 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:51 CEST] Transferrer: Uploaded daemon.log.7

SHA256E-s2639--c7a0e874ae2dbc874732c000928a5c2a1a6c3d75dcb89b590fcb9e13415427cd.log.6

          2,639 100%    0.00kB/s    0:00:00  
          2,639 100%    0.00kB/s    0:00:00 (xfr#1, to-chk=0/1)
[2015-06-07 09:44:51 CEST] Transferrer: Uploaded daemon.log.6
To ssh://redacted.net/srv/git/seb/annex/annex.git
   854cbda..c940c96  git-annex -> synced/git-annex
   0d8b74a..3865343  master -> synced/master
[2015-06-07 09:44:54 CEST] Pusher: Syncing with origin 
(recording state in git...)
To ssh://redacted.net/srv/git/seb/annex/annex.git
   c940c96..95a399f  git-annex -> synced/git-annex
   3865343..c04efc3  master -> synced/master

"""]]