- gsc :: Fractional d => Dendrogram d a -> Dendrogram d (a, d)
Documentation
gsc :: Fractional d => Dendrogram d a -> Dendrogram d (a, d)Source
O(n^2) Calculates the Gerstein/Sonnhammer/Chothia weights for all elements of a dendrogram. Weights are annotated to the leafs of the dendrogram while distances in branches are kept unchanged.
Distances d
in branches should be non-increasing and between
0
(in the leafs) and 1
. The final weights are normalized
to average to 1
(i.e. sum to the number of sequences, the
same they would sum if all weights were 1
).