Name:                gsc-weighting
Version:             0.2.2
Synopsis:            Generic implementation of Gerstein/Sonnhammer/Chothia weighting.
License:             BSD3
License-file:        LICENSE
Author:              Felipe Almeida Lessa
Maintainer:          felipe.lessa@gmail.com
Category:            Clustering
Build-type:          Simple
Cabal-version:       >= 1.6
Description:
  In their 1994 paper \"Volume Changes in Protein Evolution\",
  Gerstein, Sonnhammer and Chothia developed a weighting
  procedure for protein sequences to avoid over-represented
  sequences in the appendix \"A Method to Weight Protein
  Sequences to Correct for Unequal Representation\".  Although
  their method was developed for protein sequences, it is readily
  extended to work on any measurable set.
  .
  This package calculates GSC weights for any reasonable
  dendrogram.  If you want to recreate their algorithm, then just
  use @UPGMA@ as linkage and residue identity as distance
  function when creating the dendrogram.
  .
  Changes in version 0.2:
  .
  * Updated to work with @hierarchical-clustering@ 0.4.
  .
  Changes in version 0.1.1.1:
  .
  * Use an stricter upper bound on @hierachical-clustering@.
  .
  Changes in version 0.1.1:
  .
  * Now works even when some (or all) branches have distance zero
    (i.e. elements below that branches are all equal with respect
    to distance metric that was used to create the dendrogram).


Source-repository head
  type: git
  location: https://github.com/meteficha/gsc-weighting

Library
  Exposed-modules:
    Data.Weighting.GSC
  Build-depends:
      base                    == 4.*
    , hierarchical-clustering == 0.4.*
  GHC-options: -Wall