The hPDB package

[Tags:bsd3, library]

Protein Data Bank file format is a most popular format for holding biomolecule data. This is a very fast parser (below 7s for the largest entry in PDB - 1HTQ which is over 70MB - as compared with 11s of RASMOL 2.7.5, or 2m15s of BioPython with Python 2.6 interpreter.) It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython's PDB parser.


Versions 0.99, 0.999, 0.9999, 0.9999.1, 1.0, 1.1, 1.1.1, 1.1.2, 1.2.0,,,,,,,,, (info)
Dependencies AC-Vector, base (>=4.0 && <4.7), bytestring (<= || >=, bytestring-mmap, containers, deepseq, directory, ghc-prim, mtl, QuickCheck (>=, template-haskell, text (>=, text-format (<= || >=, vector (<0.10 || >=, zlib (<= || >= [details]
License BSD3
Copyright Copyright by Michal J. Gajda '2009-'2012
Author Michal J. Gajda
Category Bioinformatics
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Source repository head: git clone git://
Uploaded Sun Jul 7 18:17:23 UTC 2013 by MichalGajda
Distributions LTSHaskell:, NixOS:, Stackage:, Tumbleweed:
Downloads 3178 total (117 in the last 30 days)
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Status Docs uploaded by user
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have-mmapUse bytestring-mmap to read input faster.EnabledAutomatic
have-sse2Use -msse2 for faster code.EnabledAutomatic
old-text-formatUse text-format versions before (and define Params instance for 11-tuple to 20-tuple yourself.) Disable for (yet unreleased) versions after when change was merged into upstream.EnabledAutomatic
old-bytestringUse bytestring before version 0.10 (introduced in GHC 7.6), and define NFData for Data.ByteString yourself. Disable for GHC 7.6.DisabledAutomatic
old-zlibUse zlib before version 0.5.4 (introduced in GHC 7.6). Disable for GHC 7.6.1DisabledAutomatic
old-vectorUse old vector library before version 0.10 (introduced along with GHC 7.6). Disable for GHC 7.6.1 and latest 7.4.2.DisabledAutomatic

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