Build #1 for hPDB-0.9999.1
Package | hPDB-0.9999.1 |
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Install | InstallOk |
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Docs | Ok |
Tests | NotTried |
Time submitted | unknown |
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Compiler | ghc-7.6.3 |
OS | linux |
Arch | x86_64 |
Dependencies | zlib-0.5.4.1, vector-0.10.9.1, text-format-0.3.1.0, text-0.11.2.3, template-haskell-2.8.0.0, parallel-3.2.0.4, mtl-2.1.2, mmap-0.5.9, iterable-2.0, ghc-prim-0.3.0.0, directory-1.2.0.1, deepseq-1.3.0.1, containers-0.5.0.0, bytestring-0.10.0.2, base-4.6.0.1, QuickCheck-2.6, AC-Vector-2.3.2 |
Flags | -old-zlib -old-vector -old-bytestring have-text-format have-sse2 have-mmap |
Code Coverage
No Code Coverage was submitted for this report.
Build log
[view raw]
Configuring hPDB-0.9999.1... Flags chosen: old-vector=False, old-zlib=False, old-bytestring=False, have-text-format=True, have-sse2=True, have-mmap=True Dependency AC-Vector ==2.3.2: using AC-Vector-2.3.2 Dependency QuickCheck ==2.6: using QuickCheck-2.6 Dependency base ==4.6.0.1: using base-4.6.0.1 Dependency bytestring ==0.10.0.2: using bytestring-0.10.0.2 Dependency containers ==0.5.0.0: using containers-0.5.0.0 Dependency deepseq ==1.3.0.1: using deepseq-1.3.0.1 Dependency directory ==1.2.0.1: using directory-1.2.0.1 Dependency ghc-prim ==0.3.0.0: using ghc-prim-0.3.0.0 Dependency iterable ==2.0: using iterable-2.0 Dependency mmap ==0.5.9: using mmap-0.5.9 Dependency mtl ==2.1.2: using mtl-2.1.2 Dependency parallel ==3.2.0.4: using parallel-3.2.0.4 Dependency template-haskell ==2.8.0.0: using template-haskell-2.8.0.0 Dependency text ==0.11.2.3: using text-0.11.2.3 Dependency text-format ==0.3.1.0: using text-format-0.3.1.0 Dependency vector ==0.10.9.1: using vector-0.10.9.1 Dependency zlib ==0.5.4.1: using zlib-0.5.4.1 Using Cabal-1.16.0.3 compiled by ghc-7.6 Using compiler: ghc-7.6.3 Using install prefix: /srv/hackage/var/build/cache/inst Binaries installed in: /srv/hackage/var/build/cache/inst/bin Libraries installed in: /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3 Private binaries installed in: /srv/hackage/var/build/cache/inst/libexec Data files installed in: /srv/hackage/var/build/cache/inst/share/hPDB-0.9999.1 Documentation installed in: /srv/hackage/var/build/cache/inst/share/doc/hPDB-0.9999.1 Using alex version 3.0.1 found on system at: /usr/bin/alex Using ar found on system at: /usr/bin/ar No c2hs found No cpphs found No ffihugs found Using gcc version 4.7 found on system at: /usr/bin/gcc Using ghc version 7.6.3 found on system at: /usr/local/bin/ghc Using ghc-pkg version 7.6.3 found on system at: /usr/local/bin/ghc-pkg No greencard found Using haddock version 2.13.2 found on system at: /usr/local/bin/haddock Using happy version 1.18.9 found on system at: /usr/bin/happy No hmake found Using hpc version 0.6 found on system at: /usr/local/bin/hpc Using hsc2hs version 0.67 found on system at: /usr/local/bin/hsc2hs Using hscolour version 1.19 found on system at: /usr/bin/HsColour No hugs found No jhc found Using ld found on system at: /usr/bin/ld No lhc found No lhc-pkg found No nhc98 found No pkg-config found Using ranlib found on system at: /usr/bin/ranlib Using strip found on system at: /usr/bin/strip Using tar found on system at: /bin/tar No uhc found creating dist/build creating dist/build/autogen Building hPDB-0.9999.1... Preprocessing library hPDB-0.9999.1... Building library... creating dist/build /usr/local/bin/ghc --make -fbuilding-cabal-package -odir dist/build -hidir dist/build -stubdir dist/build -i -idist/build -i. -idist/build/autogen -Idist/build/autogen -Idist/build -optP-DHAVE_MMAP -optP-DHAVE_TEXT_FORMAT -optP-include -optPdist/build/autogen/cabal_macros.h -package-name hPDB-0.9999.1 -hide-all-packages -package-db /srv/hackage/var/build/cache/inst/local.conf.d -package-db dist/package.conf.inplace -package-id AC-Vector-2.3.2-f551a33f8943029afdfed55411362848 -package-id QuickCheck-2.6-2613b8664f74d924e0c53b79dc47a12a -package-id base-4.6.0.1-8aa5d403c45ea59dcd2c39f123e27d57 -package-id bytestring-0.10.0.2-4f93248f75667c2c3321a7a6761b576f -package-id containers-0.5.0.0-ab1dae9a94cd3cc84e7b2805636ebfa2 -package-id deepseq-1.3.0.1-5cc4cd89bdc2e8f6db1833d95ec36926 -package-id directory-1.2.0.1-91a788fd88acd7f149f0f10f5f1e23f2 -package-id ghc-prim-0.3.0.0-d5221a8c8a269b66ab9a07bdc23317dd -package-id iterable-2.0-185c61056cddf53866396cb38de26ad4 -package-id mmap-0.5.9-7157fa048ac687234d99d305c5b6b493 -package-id mtl-2.1.2-94c72af955e94b8d7b2f359dadd0cb62 -package-id parallel-3.2.0.4-791d1848e6a36e7f94093987ecf25858 -package-id template-haskell-2.8.0.0-a3012803fde1dc362e555b35a1a78e6d -package-id text-0.11.2.3-20bbe8fabd6e57647019c7050504c715 -package-id text-format-0.3.1.0-eb06270c16c61650902066f08939e384 -package-id vector-0.10.9.1-ca2c8d6bfa71790e874ecb0b5b43e857 -package-id zlib-0.5.4.1-13ba81ac0d7e6f3bdf1ee5ddce4e9aab -XHaskell98 Bio.PDB.EventParser.PDBEvents Bio.PDB.EventParser.PDBEventParser Bio.PDB.EventParser.ExperimentalMethods Bio.PDB.EventParser.HelixTypes Bio.PDB.EventParser.StrandSense Bio.PDB.Structure Bio.PDB.StructureBuilder Bio.PDB.Iterable Bio.PDB.IO Bio.PDB.Fasta Bio.PDB Bio.PDB.Structure.Vector Bio.PDB.Structure.Elements Bio.PDB.Structure.List Bio.PDB.StructurePrinter Bio.PDB.EventParser.PDBEventPrinter Bio.PDB.IO.OpenAnyFile Bio.PDB.EventParser.ParseATOM Bio.PDB.EventParser.ParseCAVEAT Bio.PDB.EventParser.ParseCISPEP Bio.PDB.EventParser.ParseCONECT Bio.PDB.EventParser.ParseCRYST1 Bio.PDB.EventParser.ParseDBREF Bio.PDB.EventParser.ParseFORMUL Bio.PDB.EventParser.ParseHEADER Bio.PDB.EventParser.ParseHELIX Bio.PDB.EventParser.ParseHET Bio.PDB.EventParser.ParseHETNAM Bio.PDB.EventParser.ParseHYDBND Bio.PDB.EventParser.ParseIntRecord Bio.PDB.EventParser.ParseJRNL Bio.PDB.EventParser.ParseLINK Bio.PDB.EventParser.ParseListRecord Bio.PDB.EventParser.ParseMASTER Bio.PDB.EventParser.ParseMatrixRecord Bio.PDB.EventParser.ParseMODRES Bio.PDB.EventParser.ParseObsoleting Bio.PDB.EventParser.ParseREMARK Bio.PDB.EventParser.ParseREVDAT Bio.PDB.EventParser.ParseSEQADV Bio.PDB.EventParser.ParseSEQRES Bio.PDB.EventParser.ParseSHEET Bio.PDB.EventParser.ParseSITE Bio.PDB.EventParser.ParseSLTBRG Bio.PDB.EventParser.ParseSpecListRecord Bio.PDB.EventParser.ParseSPLIT Bio.PDB.EventParser.ParseSSBOND Bio.PDB.EventParser.ParseTER Bio.PDB.EventParser.ParseTITLE Bio.PDB.EventParser.ParseTVECT Bio.PDB.EventParser.PDBParsingAbstractions Bio.PDB.EventParser.FastParse Bio.PDB.Util.MissingInstances Bio.PDB.Common Bio.PDB.Iterable.Utils Bio.PDB.Iterable.Instances Bio.PDB.StructureBuilder.Internals Bio.PDB.StructureBuilder.Parallel -msse2 -fspec-constr-count=4 -O3 -fspec-constr-count=4 -O3 -O0 [ 1 of 58] Compiling Bio.PDB.Util.MissingInstances ( Bio/PDB/Util/MissingInstances.hs, dist/build/Bio/PDB/Util/MissingInstances.o ) [ 2 of 58] Compiling Bio.PDB.EventParser.FastParse ( Bio/PDB/EventParser/FastParse.hs, dist/build/Bio/PDB/EventParser/FastParse.o ) Loading package ghc-prim ... linking ... done. Loading package integer-gmp ... linking ... done. Loading package base ... linking ... done. Loading package array-0.4.0.1 ... linking ... done. Loading package deepseq-1.3.0.1 ... linking ... done. Loading package bytestring-0.10.0.2 ... linking ... done. Loading package zlib-0.5.4.1 ... linking ... done. Loading package text-0.11.2.3 ... linking ... done. Loading package double-conversion-0.2.0.6 ... linking ... done. Loading package old-locale-1.0.0.5 ... linking ... done. Loading package time-1.4.0.1 ... linking ... done. Loading package transformers-0.3.0.0 ... linking ... done. Loading package text-format-0.3.1.0 ... linking ... done. Loading package containers-0.5.0.0 ... linking ... done. Loading package parallel-3.2.0.4 ... linking ... done. Loading package mmap-0.5.9 ... linking ... done. Loading package mtl-2.1.2 ... linking ... done. Loading package pretty-1.1.1.0 ... linking ... done. Loading package template-haskell ... linking ... done. Loading package primitive-0.5.1.0 ... linking ... done. Loading package vector-0.10.9.1 ... linking ... done. Loading package iterable-2.0 ... linking ... done. Loading package filepath-1.3.0.1 ... linking ... done. Loading package unix-2.6.0.1 ... linking ... done. Loading package directory-1.2.0.1 ... linking ... done. Loading package random-1.0.1.1 ... linking ... done. Loading package QuickCheck-2.6 ... linking ... done. Loading package AC-Vector-2.3.2 ... linking ... done. [ 3 of 58] Compiling Bio.PDB.IO.OpenAnyFile ( Bio/PDB/IO/OpenAnyFile.hs, dist/build/Bio/PDB/IO/OpenAnyFile.o ) [ 4 of 58] Compiling Bio.PDB.Structure.Vector ( Bio/PDB/Structure/Vector.hs, dist/build/Bio/PDB/Structure/Vector.o ) [ 5 of 58] Compiling Bio.PDB.Structure.List ( Bio/PDB/Structure/List.hs, dist/build/Bio/PDB/Structure/List.o ) [ 6 of 58] Compiling Bio.PDB.Common ( Bio/PDB/Common.hs, dist/build/Bio/PDB/Common.o ) [ 7 of 58] Compiling Bio.PDB.EventParser.StrandSense ( Bio/PDB/EventParser/StrandSense.hs, dist/build/Bio/PDB/EventParser/StrandSense.o ) [ 8 of 58] Compiling Bio.PDB.EventParser.HelixTypes ( Bio/PDB/EventParser/HelixTypes.hs, dist/build/Bio/PDB/EventParser/HelixTypes.o ) [ 9 of 58] Compiling Bio.PDB.EventParser.ExperimentalMethods ( Bio/PDB/EventParser/ExperimentalMethods.hs, dist/build/Bio/PDB/EventParser/ExperimentalMethods.o ) [10 of 58] Compiling Bio.PDB.EventParser.PDBEvents ( Bio/PDB/EventParser/PDBEvents.hs, dist/build/Bio/PDB/EventParser/PDBEvents.o ) [11 of 58] Compiling Bio.PDB.EventParser.PDBParsingAbstractions ( Bio/PDB/EventParser/PDBParsingAbstractions.hs, dist/build/Bio/PDB/EventParser/PDBParsingAbstractions.o ) [12 of 58] Compiling Bio.PDB.EventParser.ParseATOM ( Bio/PDB/EventParser/ParseATOM.hs, dist/build/Bio/PDB/EventParser/ParseATOM.o ) [13 of 58] Compiling Bio.PDB.EventParser.ParseHEADER ( Bio/PDB/EventParser/ParseHEADER.hs, dist/build/Bio/PDB/EventParser/ParseHEADER.o ) [14 of 58] Compiling Bio.PDB.EventParser.ParseTITLE ( Bio/PDB/EventParser/ParseTITLE.hs, dist/build/Bio/PDB/EventParser/ParseTITLE.o ) [15 of 58] Compiling Bio.PDB.EventParser.ParseIntRecord ( Bio/PDB/EventParser/ParseIntRecord.hs, dist/build/Bio/PDB/EventParser/ParseIntRecord.o ) [16 of 58] Compiling Bio.PDB.EventParser.ParseREVDAT ( Bio/PDB/EventParser/ParseREVDAT.hs, dist/build/Bio/PDB/EventParser/ParseREVDAT.o ) [17 of 58] Compiling Bio.PDB.EventParser.ParseCONECT ( Bio/PDB/EventParser/ParseCONECT.hs, dist/build/Bio/PDB/EventParser/ParseCONECT.o ) [18 of 58] Compiling Bio.PDB.EventParser.ParseSEQRES ( Bio/PDB/EventParser/ParseSEQRES.hs, dist/build/Bio/PDB/EventParser/ParseSEQRES.o ) [19 of 58] Compiling Bio.PDB.EventParser.ParseCRYST1 ( Bio/PDB/EventParser/ParseCRYST1.hs, dist/build/Bio/PDB/EventParser/ParseCRYST1.o ) [20 of 58] Compiling Bio.PDB.EventParser.ParseHELIX ( Bio/PDB/EventParser/ParseHELIX.hs, dist/build/Bio/PDB/EventParser/ParseHELIX.o ) [21 of 58] Compiling Bio.PDB.EventParser.ParseSHEET ( Bio/PDB/EventParser/ParseSHEET.hs, dist/build/Bio/PDB/EventParser/ParseSHEET.o ) [22 of 58] Compiling Bio.PDB.EventParser.ParseTER ( Bio/PDB/EventParser/ParseTER.hs, dist/build/Bio/PDB/EventParser/ParseTER.o ) [23 of 58] Compiling Bio.PDB.EventParser.ParseMASTER ( Bio/PDB/EventParser/ParseMASTER.hs, dist/build/Bio/PDB/EventParser/ParseMASTER.o ) [24 of 58] Compiling Bio.PDB.EventParser.ParseMODRES ( Bio/PDB/EventParser/ParseMODRES.hs, dist/build/Bio/PDB/EventParser/ParseMODRES.o ) [25 of 58] Compiling Bio.PDB.EventParser.ParseSEQADV ( Bio/PDB/EventParser/ParseSEQADV.hs, dist/build/Bio/PDB/EventParser/ParseSEQADV.o ) [26 of 58] Compiling Bio.PDB.EventParser.ParseCAVEAT ( Bio/PDB/EventParser/ParseCAVEAT.hs, dist/build/Bio/PDB/EventParser/ParseCAVEAT.o ) [27 of 58] Compiling Bio.PDB.EventParser.ParseSPLIT ( Bio/PDB/EventParser/ParseSPLIT.hs, dist/build/Bio/PDB/EventParser/ParseSPLIT.o ) [28 of 58] Compiling Bio.PDB.EventParser.ParseJRNL ( Bio/PDB/EventParser/ParseJRNL.hs, dist/build/Bio/PDB/EventParser/ParseJRNL.o ) [29 of 58] Compiling Bio.PDB.EventParser.ParseREMARK ( Bio/PDB/EventParser/ParseREMARK.hs, dist/build/Bio/PDB/EventParser/ParseREMARK.o ) [30 of 58] Compiling Bio.PDB.EventParser.ParseDBREF ( Bio/PDB/EventParser/ParseDBREF.hs, dist/build/Bio/PDB/EventParser/ParseDBREF.o ) [31 of 58] Compiling Bio.PDB.EventParser.ParseHETNAM ( Bio/PDB/EventParser/ParseHETNAM.hs, dist/build/Bio/PDB/EventParser/ParseHETNAM.o ) [32 of 58] Compiling Bio.PDB.EventParser.ParseHET ( Bio/PDB/EventParser/ParseHET.hs, dist/build/Bio/PDB/EventParser/ParseHET.o ) [33 of 58] Compiling Bio.PDB.EventParser.ParseFORMUL ( Bio/PDB/EventParser/ParseFORMUL.hs, dist/build/Bio/PDB/EventParser/ParseFORMUL.o ) [34 of 58] Compiling Bio.PDB.EventParser.ParseCISPEP ( Bio/PDB/EventParser/ParseCISPEP.hs, dist/build/Bio/PDB/EventParser/ParseCISPEP.o ) [35 of 58] Compiling Bio.PDB.EventParser.ParseSSBOND ( Bio/PDB/EventParser/ParseSSBOND.hs, dist/build/Bio/PDB/EventParser/ParseSSBOND.o ) [36 of 58] Compiling Bio.PDB.EventParser.ParseLINK ( Bio/PDB/EventParser/ParseLINK.hs, dist/build/Bio/PDB/EventParser/ParseLINK.o ) [37 of 58] Compiling Bio.PDB.EventParser.ParseSLTBRG ( Bio/PDB/EventParser/ParseSLTBRG.hs, dist/build/Bio/PDB/EventParser/ParseSLTBRG.o ) [38 of 58] Compiling Bio.PDB.EventParser.ParseHYDBND ( Bio/PDB/EventParser/ParseHYDBND.hs, dist/build/Bio/PDB/EventParser/ParseHYDBND.o ) [39 of 58] Compiling Bio.PDB.EventParser.ParseSITE ( Bio/PDB/EventParser/ParseSITE.hs, dist/build/Bio/PDB/EventParser/ParseSITE.o ) [40 of 58] Compiling Bio.PDB.EventParser.ParseObsoleting ( Bio/PDB/EventParser/ParseObsoleting.hs, dist/build/Bio/PDB/EventParser/ParseObsoleting.o ) [41 of 58] Compiling Bio.PDB.EventParser.ParseSpecListRecord ( Bio/PDB/EventParser/ParseSpecListRecord.hs, dist/build/Bio/PDB/EventParser/ParseSpecListRecord.o ) [42 of 58] Compiling Bio.PDB.EventParser.ParseListRecord ( Bio/PDB/EventParser/ParseListRecord.hs, dist/build/Bio/PDB/EventParser/ParseListRecord.o ) [43 of 58] Compiling Bio.PDB.EventParser.ParseMatrixRecord ( Bio/PDB/EventParser/ParseMatrixRecord.hs, dist/build/Bio/PDB/EventParser/ParseMatrixRecord.o ) [44 of 58] Compiling Bio.PDB.EventParser.ParseTVECT ( Bio/PDB/EventParser/ParseTVECT.hs, dist/build/Bio/PDB/EventParser/ParseTVECT.o ) [45 of 58] Compiling Bio.PDB.EventParser.PDBEventParser ( Bio/PDB/EventParser/PDBEventParser.hs, dist/build/Bio/PDB/EventParser/PDBEventParser.o ) [46 of 58] Compiling Bio.PDB.Structure ( Bio/PDB/Structure.hs, dist/build/Bio/PDB/Structure.o ) [47 of 58] Compiling Bio.PDB.Iterable.Instances ( Bio/PDB/Iterable/Instances.hs, dist/build/Bio/PDB/Iterable/Instances.o ) [48 of 58] Compiling Bio.PDB.Iterable.Utils ( Bio/PDB/Iterable/Utils.hs, dist/build/Bio/PDB/Iterable/Utils.o ) [49 of 58] Compiling Bio.PDB.Iterable ( Bio/PDB/Iterable.hs, dist/build/Bio/PDB/Iterable.o ) [50 of 58] Compiling Bio.PDB.Fasta ( Bio/PDB/Fasta.hs, dist/build/Bio/PDB/Fasta.o ) [51 of 58] Compiling Bio.PDB.Structure.Elements ( Bio/PDB/Structure/Elements.hs, dist/build/Bio/PDB/Structure/Elements.o ) [52 of 58] Compiling Bio.PDB.StructureBuilder.Internals ( Bio/PDB/StructureBuilder/Internals.hs, dist/build/Bio/PDB/StructureBuilder/Internals.o ) [53 of 58] Compiling Bio.PDB.StructureBuilder.Parallel ( Bio/PDB/StructureBuilder/Parallel.hs, dist/build/Bio/PDB/StructureBuilder/Parallel.o ) [54 of 58] Compiling Bio.PDB.StructureBuilder ( Bio/PDB/StructureBuilder.hs, dist/build/Bio/PDB/StructureBuilder.o ) [55 of 58] Compiling Bio.PDB.EventParser.PDBEventPrinter ( Bio/PDB/EventParser/PDBEventPrinter.hs, dist/build/Bio/PDB/EventParser/PDBEventPrinter.o ) [56 of 58] Compiling Bio.PDB.StructurePrinter ( Bio/PDB/StructurePrinter.hs, dist/build/Bio/PDB/StructurePrinter.o ) [57 of 58] Compiling Bio.PDB.IO ( Bio/PDB/IO.hs, dist/build/Bio/PDB/IO.o ) [58 of 58] Compiling Bio.PDB ( Bio/PDB.hs, dist/build/Bio/PDB.o ) Linking... /usr/bin/ar -r dist/build/libHShPDB-0.9999.1.a dist/build/Bio/PDB/EventParser/PDBEvents.o dist/build/Bio/PDB/EventParser/PDBEventParser.o dist/build/Bio/PDB/EventParser/ExperimentalMethods.o dist/build/Bio/PDB/EventParser/HelixTypes.o dist/build/Bio/PDB/EventParser/StrandSense.o dist/build/Bio/PDB/Structure.o dist/build/Bio/PDB/StructureBuilder.o dist/build/Bio/PDB/Iterable.o dist/build/Bio/PDB/IO.o dist/build/Bio/PDB/Fasta.o dist/build/Bio/PDB.o dist/build/Bio/PDB/Structure/Vector.o dist/build/Bio/PDB/Structure/Elements.o dist/build/Bio/PDB/Structure/List.o dist/build/Bio/PDB/StructurePrinter.o dist/build/Bio/PDB/EventParser/PDBEventPrinter.o dist/build/Bio/PDB/IO/OpenAnyFile.o dist/build/Bio/PDB/EventParser/ParseATOM.o dist/build/Bio/PDB/EventParser/ParseCAVEAT.o dist/build/Bio/PDB/EventParser/ParseCISPEP.o dist/build/Bio/PDB/EventParser/ParseCONECT.o dist/build/Bio/PDB/EventParser/ParseCRYST1.o dist/build/Bio/PDB/EventParser/ParseDBREF.o dist/build/Bio/PDB/EventParser/ParseFORMUL.o dist/build/Bio/PDB/EventParser/ParseHEADER.o dist/build/Bio/PDB/EventParser/ParseHELIX.o dist/build/Bio/PDB/EventParser/ParseHET.o dist/build/Bio/PDB/EventParser/ParseHETNAM.o dist/build/Bio/PDB/EventParser/ParseHYDBND.o dist/build/Bio/PDB/EventParser/ParseIntRecord.o dist/build/Bio/PDB/EventParser/ParseJRNL.o dist/build/Bio/PDB/EventParser/ParseLINK.o dist/build/Bio/PDB/EventParser/ParseListRecord.o dist/build/Bio/PDB/EventParser/ParseMASTER.o dist/build/Bio/PDB/EventParser/ParseMatrixRecord.o dist/build/Bio/PDB/EventParser/ParseMODRES.o dist/build/Bio/PDB/EventParser/ParseObsoleting.o dist/build/Bio/PDB/EventParser/ParseREMARK.o dist/build/Bio/PDB/EventParser/ParseREVDAT.o dist/build/Bio/PDB/EventParser/ParseSEQADV.o dist/build/Bio/PDB/EventParser/ParseSEQRES.o dist/build/Bio/PDB/EventParser/ParseSHEET.o dist/build/Bio/PDB/EventParser/ParseSITE.o dist/build/Bio/PDB/EventParser/ParseSLTBRG.o dist/build/Bio/PDB/EventParser/ParseSpecListRecord.o dist/build/Bio/PDB/EventParser/ParseSPLIT.o dist/build/Bio/PDB/EventParser/ParseSSBOND.o dist/build/Bio/PDB/EventParser/ParseTER.o dist/build/Bio/PDB/EventParser/ParseTITLE.o dist/build/Bio/PDB/EventParser/ParseTVECT.o dist/build/Bio/PDB/EventParser/PDBParsingAbstractions.o dist/build/Bio/PDB/EventParser/FastParse.o dist/build/Bio/PDB/Util/MissingInstances.o dist/build/Bio/PDB/Common.o dist/build/Bio/PDB/Iterable/Utils.o dist/build/Bio/PDB/Iterable/Instances.o dist/build/Bio/PDB/StructureBuilder/Internals.o dist/build/Bio/PDB/StructureBuilder/Parallel.o /usr/bin/ar: creating dist/build/libHShPDB-0.9999.1.a In-place registering hPDB-0.9999.1... /usr/local/bin/ghc-pkg update - --global --user --package-db=/srv/hackage/var/build/cache/inst/local.conf.d --package-db=dist/package.conf.inplace --no-user-package-conf Running Haddock for hPDB-0.9999.1... /usr/local/bin/haddock --ghc-version --built-in-themes creating dist/build creating dist/build/autogen Running hscolour for hPDB-0.9999.1... creating dist/doc/html/hPDB creating dist/doc/html creating dist/doc creating dist/doc/html creating dist/doc/html/hPDB Preprocessing library hPDB-0.9999.1... creating dist/doc/html/hPDB/src /usr/bin/HsColour -print-css -odist/doc/html/hPDB/src/hscolour.css /usr/bin/HsColour -css -anchor -odist/doc/html/hPDB/src/Bio-PDB-EventParser-PDBEvents.html Bio/PDB/EventParser/PDBEvents.hs /usr/bin/HsColour -css -anchor -odist/doc/html/hPDB/src/Bio-PDB-EventParser-PDBEventParser.html Bio/PDB/EventParser/PDBEventParser.hs /usr/bin/HsColour -css -anchor -odist/doc/html/hPDB/src/Bio-PDB-EventParser-ExperimentalMethods.html 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dist/build/tmp-2875/Bio/PDB/Structure/Vector.hs dist/build/tmp-2875/Bio/PDB/Structure/Elements.hs dist/build/tmp-2875/Bio/PDB/Structure/List.hs dist/build/tmp-2875/Bio/PDB/StructurePrinter.hs dist/build/tmp-2875/Bio/PDB/EventParser/PDBEventPrinter.hs dist/build/tmp-2875/Bio/PDB/IO/OpenAnyFile.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseATOM.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseCAVEAT.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseCISPEP.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseCONECT.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseCRYST1.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseDBREF.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseFORMUL.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseHEADER.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseHELIX.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseHET.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseHETNAM.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseHYDBND.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseIntRecord.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseJRNL.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseLINK.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseListRecord.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseMASTER.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseMatrixRecord.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseMODRES.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseObsoleting.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseREMARK.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseREVDAT.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSEQADV.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSEQRES.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSHEET.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSITE.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSLTBRG.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSpecListRecord.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSPLIT.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseSSBOND.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseTER.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseTITLE.hs dist/build/tmp-2875/Bio/PDB/EventParser/ParseTVECT.hs dist/build/tmp-2875/Bio/PDB/EventParser/PDBParsingAbstractions.hs dist/build/tmp-2875/Bio/PDB/EventParser/FastParse.hs dist/build/tmp-2875/Bio/PDB/Util/MissingInstances.hs dist/build/tmp-2875/Bio/PDB/Common.hs dist/build/tmp-2875/Bio/PDB/Iterable/Utils.hs dist/build/tmp-2875/Bio/PDB/Iterable/Instances.hs dist/build/tmp-2875/Bio/PDB/StructureBuilder/Internals.hs dist/build/tmp-2875/Bio/PDB/StructureBuilder/Parallel.hs --built-in-themes Haddock coverage: 100% ( 1 / 1) in 'Bio.PDB.Util.MissingInstances' 100% ( 4 / 4) in 'Bio.PDB.EventParser.FastParse' 100% ( 3 / 3) in 'Bio.PDB.IO.OpenAnyFile' 93% ( 13 / 14) in 'Bio.PDB.Structure.Vector' 100% ( 30 / 30) in 'Bio.PDB.Structure.List' 67% ( 2 / 3) in 'Bio.PDB.Common' 100% ( 2 / 2) in 'Bio.PDB.EventParser.StrandSense' 100% ( 4 / 4) in 'Bio.PDB.EventParser.HelixTypes' 100% ( 4 / 4) in 'Bio.PDB.EventParser.ExperimentalMethods' 89% ( 8 / 9) in 'Bio.PDB.EventParser.PDBEvents' 100% ( 38 / 38) in 'Bio.PDB.EventParser.PDBParsingAbstractions' 100% ( 3 / 3) in 'Bio.PDB.EventParser.ParseATOM' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseHEADER' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseTITLE' 100% ( 3 / 3) in 'Bio.PDB.EventParser.ParseIntRecord' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseREVDAT' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseCONECT' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseSEQRES' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseCRYST1' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseHELIX' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseSHEET' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseTER' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseMASTER' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseMODRES' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseSEQADV' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseCAVEAT' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseSPLIT' 100% ( 3 / 3) in 'Bio.PDB.EventParser.ParseJRNL' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseREMARK' 100% ( 3 / 3) in 'Bio.PDB.EventParser.ParseDBREF' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseHETNAM' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseHET' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseFORMUL' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseCISPEP' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseSSBOND' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseLINK' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseSLTBRG' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseHYDBND' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseSITE' 100% ( 3 / 3) in 'Bio.PDB.EventParser.ParseObsoleting' 100% ( 3 / 3) in 'Bio.PDB.EventParser.ParseSpecListRecord' 100% ( 5 / 5) in 'Bio.PDB.EventParser.ParseListRecord' 100% ( 4 / 4) in 'Bio.PDB.EventParser.ParseMatrixRecord' 100% ( 2 / 2) in 'Bio.PDB.EventParser.ParseTVECT' 100% ( 2 / 2) in 'Bio.PDB.EventParser.PDBEventParser' 93% ( 14 / 15) in 'Bio.PDB.Structure' 100% ( 2 / 2) in 'Bio.PDB.Iterable.Instances' 100% ( 6 / 6) in 'Bio.PDB.Iterable.Utils' 100% ( 7 / 7) in 'Bio.PDB.Iterable' 100% ( 9 / 9) in 'Bio.PDB.Fasta' 100% ( 8 / 8) in 'Bio.PDB.Structure.Elements' 84% ( 16 / 19) in 'Bio.PDB.StructureBuilder.Internals' 80% ( 4 / 5) in 'Bio.PDB.StructureBuilder.Parallel' 100% ( 5 / 5) in 'Bio.PDB.StructureBuilder' 100% ( 3 / 3) in 'Bio.PDB.EventParser.PDBEventPrinter' 100% ( 2 / 2) in 'Bio.PDB.StructurePrinter' 100% ( 3 / 3) in 'Bio.PDB.IO' 96% ( 24 / 25) in 'Bio.PDB' Warning: Bio.PDB.Structure.List: could not find link destinations for: Control.Monad.Trans.Class.MonadTrans Documentation created: dist/doc/html/hPDB/index.html directory dist/doc/html/hPDB does exist: True creating /srv/hackage/var/build/cache/inst/share/doc/hPDB-0.9999.1/html copy directory 'dist/doc/html/hPDB' to '/srv/hackage/var/build/cache/inst/share/doc/hPDB-0.9999.1/html'. creating /srv/hackage/var/build/cache/inst/share/doc/hPDB-0.9999.1/html creating 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/srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseJRNL.hi Installing dist/build/Bio/PDB/EventParser/ParseLINK.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseLINK.hi Installing dist/build/Bio/PDB/EventParser/ParseListRecord.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseListRecord.hi Installing dist/build/Bio/PDB/EventParser/ParseMASTER.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseMASTER.hi Installing dist/build/Bio/PDB/EventParser/ParseMatrixRecord.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseMatrixRecord.hi Installing dist/build/Bio/PDB/EventParser/ParseMODRES.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseMODRES.hi Installing dist/build/Bio/PDB/EventParser/ParseObsoleting.hi to 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/srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseSITE.hi Installing dist/build/Bio/PDB/EventParser/ParseSLTBRG.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseSLTBRG.hi Installing dist/build/Bio/PDB/EventParser/ParseSpecListRecord.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseSpecListRecord.hi Installing dist/build/Bio/PDB/EventParser/ParseSPLIT.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseSPLIT.hi Installing dist/build/Bio/PDB/EventParser/ParseSSBOND.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseSSBOND.hi Installing dist/build/Bio/PDB/EventParser/ParseTER.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseTER.hi Installing dist/build/Bio/PDB/EventParser/ParseTITLE.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseTITLE.hi Installing dist/build/Bio/PDB/EventParser/ParseTVECT.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/ParseTVECT.hi Installing dist/build/Bio/PDB/EventParser/PDBParsingAbstractions.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/PDBParsingAbstractions.hi Installing dist/build/Bio/PDB/EventParser/FastParse.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/EventParser/FastParse.hi Installing dist/build/Bio/PDB/Util/MissingInstances.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/Util/MissingInstances.hi Installing dist/build/Bio/PDB/Common.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/Common.hi Installing dist/build/Bio/PDB/Iterable/Utils.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/Iterable/Utils.hi Installing dist/build/Bio/PDB/Iterable/Instances.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/Iterable/Instances.hi Installing dist/build/Bio/PDB/StructureBuilder/Internals.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/StructureBuilder/Internals.hi Installing dist/build/Bio/PDB/StructureBuilder/Parallel.hi to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/Bio/PDB/StructureBuilder/Parallel.hi creating /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3 Installing dist/build/libHShPDB-0.9999.1.a to /srv/hackage/var/build/cache/inst/lib/hPDB-0.9999.1/ghc-7.6.3/libHShPDB-0.9999.1.a /usr/local/bin/ghc --abi-hash -fbuilding-cabal-package -odir dist/build -hidir dist/build -stubdir dist/build -i -idist/build -i. -idist/build/autogen -Idist/build/autogen -Idist/build -optP-DHAVE_MMAP -optP-DHAVE_TEXT_FORMAT -optP-include -optPdist/build/autogen/cabal_macros.h -package-name hPDB-0.9999.1 -hide-all-packages -package-db /srv/hackage/var/build/cache/inst/local.conf.d -package-id AC-Vector-2.3.2-f551a33f8943029afdfed55411362848 -package-id QuickCheck-2.6-2613b8664f74d924e0c53b79dc47a12a -package-id base-4.6.0.1-8aa5d403c45ea59dcd2c39f123e27d57 -package-id bytestring-0.10.0.2-4f93248f75667c2c3321a7a6761b576f -package-id containers-0.5.0.0-ab1dae9a94cd3cc84e7b2805636ebfa2 -package-id deepseq-1.3.0.1-5cc4cd89bdc2e8f6db1833d95ec36926 -package-id directory-1.2.0.1-91a788fd88acd7f149f0f10f5f1e23f2 -package-id ghc-prim-0.3.0.0-d5221a8c8a269b66ab9a07bdc23317dd -package-id iterable-2.0-185c61056cddf53866396cb38de26ad4 -package-id mmap-0.5.9-7157fa048ac687234d99d305c5b6b493 -package-id mtl-2.1.2-94c72af955e94b8d7b2f359dadd0cb62 -package-id parallel-3.2.0.4-791d1848e6a36e7f94093987ecf25858 -package-id template-haskell-2.8.0.0-a3012803fde1dc362e555b35a1a78e6d -package-id text-0.11.2.3-20bbe8fabd6e57647019c7050504c715 -package-id text-format-0.3.1.0-eb06270c16c61650902066f08939e384 -package-id vector-0.10.9.1-ca2c8d6bfa71790e874ecb0b5b43e857 -package-id zlib-0.5.4.1-13ba81ac0d7e6f3bdf1ee5ddce4e9aab -XHaskell98 Bio.PDB.EventParser.PDBEvents Bio.PDB.EventParser.PDBEventParser Bio.PDB.EventParser.ExperimentalMethods Bio.PDB.EventParser.HelixTypes Bio.PDB.EventParser.StrandSense Bio.PDB.Structure Bio.PDB.StructureBuilder Bio.PDB.Iterable Bio.PDB.IO Bio.PDB.Fasta Bio.PDB Bio.PDB.Structure.Vector Bio.PDB.Structure.Elements Bio.PDB.Structure.List Bio.PDB.StructurePrinter Bio.PDB.EventParser.PDBEventPrinter Bio.PDB.IO.OpenAnyFile -msse2 -fspec-constr-count=4 -O3 -fspec-constr-count=4 -O3 -O0 Registering hPDB-0.9999.1... /usr/local/bin/ghc-pkg update - --global --user --package-db=/srv/hackage/var/build/cache/inst/local.conf.d --no-user-package-conf
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