The hPDB-examples package

[Tags: bsd3, program]

Protein Data Bank file format is a most popular format for holding biomolecule data. This is a very fast parser (below 7s for the largest entry in PDB - 1HTQ which is over 70MB - as compared with 11s of RASMOL 2.7.5, or 2m15s of BioPython with Python 2.6 interpreter.) It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython's PDB parser.


Properties

Versions0.99, 0.999, 0.9999, 1.0, 1.1, 1.1.1, 1.1.2
DependenciesAC-Vector, base (>=4.0 && <4.7), bytestring, containers, deepseq, directory, ghc-prim, GLUT, hPDB (>=0.99), mtl, Octree (>=0.5), OpenGL, QuickCheck (>=2.5.0.0), template-haskell, text (>=0.11.1.13), text-format, vector
LicenseBSD3
CopyrightCopyright by Michal J. Gajda '2009-'2012
AuthorMichal J. Gajda
Maintainermjgajda@googlemail.com
Stabilitybeta
CategoryBioinformatics
Home pagehttps://github.com/mgajda/hpdb
Bug trackermailto:mjgajda@googlemail.com
Source repositoryhead: git clone git://github.com:mgajda/hpdb-examples.git
ExecutablesViewer, StericClashCheck, Rg, PrintStructureObject, PrintEvents, CanonicalAxes, SplitModels, CleanPDB, ShiftToCenter, PDB2Fasta
Upload dateSun Jul 7 18:17:36 UTC 2013
Uploaded byMichalGajda
Downloads514 total (39 in last 30 days)

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