hPDB-examples: Parser, print and manipulate structures in PDB file format.

[ bioinformatics, bsd3, program ] [ Propose Tags ]
Versions 0.99, 0.999, 0.9999, 1.0, 1.1, 1.1.1, 1.1.2,,,,,
Dependencies AC‑Vector, base (>=4.0 && <4.7), bytestring, containers, deepseq, directory, ghc‑prim, GLUT, hPDB (>=0.99), mtl, Octree (>=0.5), OpenGL, QuickCheck (>=, template‑haskell, text (>=, text‑format, vector [details]
License BSD-3-Clause
Copyright Copyright by Michal J. Gajda '2009-'2012
Author Michal J. Gajda
Maintainer mjgajda@googlemail.com
Category Bioinformatics
Home page https://github.com/mgajda/hpdb
Bug tracker mailto:mjgajda@googlemail.com
Source repo head: git clone git://github.com:mgajda/hpdb-examples.git
Uploaded by MichalGajda at Sun Jul 7 18:17:36 UTC 2013
Distributions NixOS:, openSUSE:
Executables Viewer, StericClashCheck, Rg, PrintStructureObject, PrintEvents, CanonicalAxes, SplitModels, CleanPDB, ShiftToCenter, PDB2Fasta
Downloads 3863 total (32 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2016-12-20 [all 8 reports]
Hackage Matrix CI

Protein Data Bank file format is a most popular format for holding biomolecule data. This is a very fast parser (below 7s for the largest entry in PDB - 1HTQ which is over 70MB - as compared with 11s of RASMOL 2.7.5, or 2m15s of BioPython with Python 2.6 interpreter.) It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython's PDB parser.


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