{-# LANGUAGE BangPatterns #-} {-# LANGUAGE DataKinds #-} {-# LANGUAGE TypeFamilies #-} {-# LANGUAGE CPP #-} {-# LANGUAGE GADTs,ScopedTypeVariables, PolyKinds,FlexibleInstances,DeriveDataTypeable #-} {-| PSA, the matrix data types used in the hBLAS binding should not be regarded as being general purpose matrices. They are designed to exactly express only the matrices which are valid inputs for BLAS. When applicable, such matrices should be easily mapped to and from other matrix libraries. That said, the BLAS and LAPACK matrix formats capture a rich and very expressive subset of Dense Matrix formats. The primary and hence default format is Dense Row and Column Major Matrices, but support will be added for other formats that BLAS and LAPACK provide operations for. A guiding rule of thumb for this package is that there are no generic abstractions provided, merely machinery to ensure all uses of BLAS and LAPACK operations can be used in their full generality in a human friendly type safe fashion. It is the role of a higher level library to provide any generic operations. One such higher level lib you can interface with easily is Numerical. There is a work in progress binding to help this in the numerical-hblas package (which may not be public yet at the time of this writing) -} module Numerical.HBLAS.MatrixTypes where import qualified Data.Vector.Storable as S import qualified Data.Vector.Storable.Mutable as SM import Control.Monad.Primitive import Data.Typeable {- what I really want is this, but its not possible till datakinds works on types that aren't kind *, data Eff :: * -> * where Pure :: Eff () Mut :: s -> Eff s data EVector :: * -> * -> * where PureVector :: S.Vector el -> EVector Pure el MutVector :: SM.MVector s el -> EVector (Mut s) el -} --data Eff s where -- Pure :: Eff s -- Mut :: s -> Eff s --data EVector s el where -- PureVector :: S.Vector el -> EVector Pure el -- MutVector :: SM.MVector s e -> EVector (Mut s) el --data Eff = Pure | Mut --data EVector :: Eff -> * -> * -> * where -- PureVector :: S.Vector el -> EVector Pure () el -- MutVector :: SM.MVector s el -> EVector Mut s el data Orientation = Row | Column deriving (Eq,Show,Typeable) type Row = 'Row type Column = 'Column data SOrientation :: Orientation -> * where SRow :: SOrientation Row SColumn :: SOrientation Column #if defined(__GLASGOW_HASKELL_) && (__GLASGOW_HASKELL__ >= 707) deriving (Typeable) #endif instance Show (SOrientation Row) where show _ = "SRow" instance Show (SOrientation Column) where show _ = "SColumn" instance Eq (SOrientation Row) where (==) _ _ = True instance Eq (SOrientation Column) where (==) _ _ = True sTranpose :: (x~ TransposeF y, y~TransposeF x ) =>SOrientation x -> SOrientation y sTranpose SColumn = SRow sTranpose SRow = SColumn --- | May Blas and Lapack routines allow you to implicitly tranpose your argumments data Transpose = NoTranspose | Transpose | ConjTranspose | ConjNoTranspose deriving(Typeable,Eq,Show) -- | For Symmetric, Hermetian or Triangular matrices, which part is modeled. --- Applies to both Padded and Packed variants data MatUpLo = MatUpper | MatLower deriving(Typeable,Eq,Show) -- | Many triangular matrix routines expect to know if the matrix is -- all 1 (unit ) on the diagonal or not. Likewise, Many Factorizations routines -- can be assumed to return unit triangular matrices data MatDiag= MatUnit | MatNonUnit deriving(Typeable,Eq,Show) -- | For certain Square matrix product, do you want to Compute A*B or B*A -- only used as an argument data EquationSide = LeftSide | RightSide deriving(Typeable,Eq,Show) {- should think long and hard before adding implicit transposition to the internal data model -} type family TransposeF (x :: Orientation) :: Orientation type instance TransposeF Row = Column type instance TransposeF Column = Row data Variant = Direct | Implicit deriving(Typeable,Eq,Show) -- | 'Variant' and 'SVariant' are a bit odd looking, -- They crop up when needing to talk about eg the row vectors of a -- packed triangular row major matrix wrt both their logical size and manifest sizes -- this notion only makes sense in the 1dim case. -- If you don't understand this parameter, just use 'SDirect' and 'Direct' -- as they will generally be the correct choice for most users. data SVariant :: Variant -> * where SImplicit :: {_frontPadding ::{-UNPACK-} !Int, _endPadding:: {-#UNPACK#-} !Int } -> SVariant Implicit SDirect :: SVariant Direct data DenseVector :: Variant -> * -> * where DenseVector :: { _VariantDenseVect :: !(SVariant varnt) ,_LogicalDimDenseVector :: {-#UNPACK#-}!Int ,_StrideDenseVector :: {-#UNPACK#-} ! Int ,_bufferDenseVector :: !(S.Vector elem) } -> DenseVector varnt elem #if defined(__GLASGOW_HASKELL_) && (__GLASGOW_HASKELL__ >= 707) deriving (Typeable) #endif data MDenseVector :: * -> Variant -> * -> * where MutableDenseVector :: { _VariantMutDenseVect :: !(SVariant varnt) ,_LogicalDimMutDenseVector :: {-#UNPACK#-}!Int ,_StrideMutDenseVector :: {-#UNPACK#-} ! Int ,_bufferMutDenseVector :: !(S.MVector s elem) } -> MDenseVector s varnt elem #if defined(__GLASGOW_HASKELL_) && (__GLASGOW_HASKELL__ >= 707) deriving (Typeable) #endif -- | 'DenseMatrix' is for dense row or column major matrices data DenseMatrix :: Orientation -> * -> * where DenseMatrix ::{ _OrientationMat :: SOrientation ornt , _XdimDenMat :: {-# UNPACK #-}!Int, _YdimDenMat :: {-# UNPACK #-}!Int , _StrideDenMat :: {-# UNPACK #-} !Int , _bufferDenMat :: {-#UNPACK#-}!(S.Vector elem) }-> DenseMatrix ornt elem #if defined(__GLASGOW_HASKELL_) && (__GLASGOW_HASKELL__ >= 707) deriving (Typeable) #endif -- | this should never be used in real code, ever ever, but its handy for testing -- but seriously never use this in real code, it doesn't do what you think -- because in the case of a matrix slice, the underlying buffer will have -- additional elements aside from the ones you expect! -- never use this in real code please. :) mutableVectorToList :: (PrimMonad m, S.Storable a) => S.MVector (PrimState m) a -> m [a] mutableVectorToList mv = do v <- S.unsafeFreeze mv return (S.toList v ) {-# NOINLINE mutableVectorToList #-} {- need to handle rendering a slice differently than a direct matrix -} instance (Show el,SM.Storable el )=> Show (DenseMatrix Row el) where show mat@(DenseMatrix SRow xdim ydim stride buffer) | stride == xdim = "DenseMatrix SRow " ++ " " ++show xdim ++ " " ++ show ydim ++ " " ++ show stride ++ "(" ++ show buffer ++ ")" | otherwise = show $ mapDenseMatrix id mat instance (Show el,SM.Storable el )=> Show (DenseMatrix Column el) where show mat@(DenseMatrix SColumn xdim ydim stride buffer) | stride == ydim = "DenseMatrix SColumn " ++ " " ++show xdim ++ " " ++ show ydim ++ " " ++ show stride ++ "(" ++ show buffer ++ ")" | otherwise = show $ mapDenseMatrix id mat -- | 'MDenseMatrix' data MDenseMatrix :: * ->Orientation -> * -> * where MutableDenseMatrix :: { _OrientationMutMat :: SOrientation ornt , _XdimDenMutMat :: {-# UNPACK #-}!Int , _YdimDenMutMat :: {-# UNPACK #-}!Int, _StrideDenMutMat :: {-# UNPACK #-} !Int, _bufferDenMutMat :: {-# UNPACK #-} !(SM.MVector s elem) } -> MDenseMatrix s ornt elem --instance (Show el,SM.Storable el, PrimMonad m )=> Show (DenseMatrix (PrimState m) Row el) where -- show mat@(DenseMatrix SRow xdim ydim stride buffer) -- | stride == xdim = "MutableDenseMatrix SRow " ++ " " ++show xdim ++ " " ++ show ydim ++ " " ++ show stride ++ "(" ++ show buffer ++ ")" -- | otherwise = show $ mapDenseMatrix id mat --instance (Show el,SM.Storable el,PrimMonad m )=> Show (DenseMatrix (PrimState m ) Column el) where -- show mat@(DenseMatrix SColumn xdim ydim stride buffer) -- | stride == xdim = "DenseMatrix SColumn " ++ " " ++show xdim ++ " " ++ show ydim ++ " " ++ show stride ++ "(" ++ show buffer ++ ")" -- | otherwise = show $ mapDenseMatrix id mat type IODenseMatrix = MDenseMatrix RealWorld --type MutDenseMatrixIO or elem = -- data PaddedSymmetricMatrix -- data PaddedHermetianMatrix --data PaddedTriangularMatrix --- these three may just be wrappers for general dense matrices --data SymmetricMatrix --data HermitianMatrix -- may just be a wrapper for symmetric? --data TriangularMatrix --data BandedMatrix {-#NOINLINE unsafeFreezeDenseMatrix #-} unsafeFreezeDenseMatrix :: (SM.Storable elem, PrimMonad m)=> MDenseMatrix (PrimState m) or elem -> m (DenseMatrix or elem) unsafeFreezeDenseMatrix (MutableDenseMatrix ornt a b c mv) = do v <- S.unsafeFreeze mv return $! DenseMatrix ornt a b c v {-# NOINLINE unsafeThawDenseMatrix #-} unsafeThawDenseMatrix :: (SM.Storable elem, PrimMonad m)=> DenseMatrix or elem-> m (MDenseMatrix (PrimState m) or elem) unsafeThawDenseMatrix (DenseMatrix ornt a b c v) = do mv <- S.unsafeThaw v return $! MutableDenseMatrix ornt a b c mv --freezeDenseMatrix getDenseMatrixRow :: DenseMatrix or elem -> Int getDenseMatrixRow (DenseMatrix _ _ ydim _ _)= ydim getDenseMatrixColumn :: DenseMatrix or elem -> Int getDenseMatrixColumn (DenseMatrix _ xdim _ _ _)= xdim getDenseMatrixLeadingDimStride :: DenseMatrix or elem -> Int getDenseMatrixLeadingDimStride (DenseMatrix _ _ _ stride _ ) = stride getDenseMatrixArray :: DenseMatrix or elem -> S.Vector elem getDenseMatrixArray (DenseMatrix _ _ _ _ arr) = arr getDenseMatrixOrientation :: DenseMatrix or elem -> SOrientation or getDenseMatrixOrientation m = _OrientationMat m uncheckedDenseMatrixIndex :: (S.Storable elem )=> DenseMatrix or elem -> (Int,Int) -> elem uncheckedDenseMatrixIndex (DenseMatrix SRow _ _ ystride arr) = \ (x,y)-> arr `S.unsafeIndex` (x + y * ystride) uncheckedDenseMatrixIndex (DenseMatrix SColumn _ _ xstride arr) = \ (x,y)-> arr `S.unsafeIndex` (y + x* xstride) uncheckedDenseMatrixIndexM :: (Monad m ,S.Storable elem )=> DenseMatrix or elem -> (Int,Int) -> m elem uncheckedDenseMatrixIndexM (DenseMatrix SRow _ _ ystride arr) = \ (x,y)-> return $! arr `S.unsafeIndex` (x + y * ystride) uncheckedDenseMatrixIndexM (DenseMatrix SColumn _ _ xstride arr) = \ (x,y)-> return $! arr `S.unsafeIndex` (y + x* xstride) uncheckedMutableDenseMatrixIndexM :: (PrimMonad m ,S.Storable elem )=> MDenseMatrix (PrimState m) or elem -> (Int,Int) -> m elem uncheckedMutableDenseMatrixIndexM (MutableDenseMatrix SRow _ _ ystride arr) = \ (x,y)-> arr `SM.unsafeRead` (x + y * ystride) uncheckedMutableDenseMatrixIndexM (MutableDenseMatrix SColumn _ _ xstride arr) = \ (x,y)-> arr `SM.unsafeRead` (y + x* xstride) swap :: (a,b)->(b,a) swap = \ (!x,!y)-> (y,x) {-# INLINE swap #-} -- | `map f matrix` mapDenseMatrix :: (S.Storable a, S.Storable b) => (a->b) -> DenseMatrix or a -> DenseMatrix or b mapDenseMatrix f rm@(DenseMatrix SRow xdim ydim _ _) = DenseMatrix SRow xdim ydim xdim $! S.generate (xdim * ydim) (\ix -> f $! uncheckedDenseMatrixIndex rm (swap $ quotRem ix xdim ) ) mapDenseMatrix f rm@(DenseMatrix SColumn xdim ydim _ _) = DenseMatrix SColumn xdim ydim ydim $! S.generate (xdim * ydim ) (\ix -> f $! uncheckedDenseMatrixIndex rm ( quotRem ix ydim ) ) imapDenseMatrix :: (S.Storable a, S.Storable b) => ((Int,Int)->a->b) -> DenseMatrix or a -> DenseMatrix or b imapDenseMatrix f rm@(DenseMatrix sornt xdim ydim _ _) = generateDenseMatrix sornt (xdim,ydim) (\ix -> f ix $! uncheckedDenseMatrixIndex rm ix ) -- | In Matrix format memory order enumeration of the index tuples, for good locality 2dim map uncheckedDenseMatrixNextTuple :: DenseMatrix or elem -> (Int,Int) -> Maybe (Int,Int) uncheckedDenseMatrixNextTuple (DenseMatrix SRow xdim ydim _ _) = \(!x,!y)-> if (x >= xdim && y >= ydim) then Nothing else Just $! swap $! quotRem (x+ xdim * y + 1) xdim uncheckedDenseMatrixNextTuple (DenseMatrix SColumn xdim ydim _ _ ) = \(!x,!y) -> if (x >= xdim && y >= ydim) then Nothing else Just $! quotRem (y + ydim * x + 1) ydim --- dont need the swap for column major -- | generateDenseMatrix Row (k,k) \(i,j)-> if i == j then 1.0 else 0.0 would generate a KxK identity matrix generateDenseMatrix :: (S.Storable a)=> SOrientation x -> (Int,Int)->((Int,Int)-> a) -> DenseMatrix x a generateDenseMatrix SRow (xdim,ydim) f = DenseMatrix SRow xdim ydim xdim $! S.generate (xdim * ydim) (\ix -> let !ixtup@(!_,!_) = swap $ quotRem ix xdim in f ixtup ) generateDenseMatrix SColumn (xdim,ydim) f = DenseMatrix SColumn xdim ydim ydim $! S.generate (xdim * ydim ) (\ix -> let ixtup@(!_,!_) = ( quotRem ix ydim ) in f ixtup ) -- | mutable version of generateDenseMatrix {-# NOINLINE generateMutableDenseMatrix #-} generateMutableDenseMatrix :: (S.Storable a,PrimMonad m)=> SOrientation x -> (Int,Int)->((Int,Int)-> a) -> m (MDenseMatrix (PrimState m) x a) generateMutableDenseMatrix sor dims fun = do x <- unsafeThawDenseMatrix $! generateDenseMatrix sor dims fun return x {-#NOINLINE generateMutableDenseVector#-} generateMutableDenseVector :: (S.Storable a,PrimMonad m) => Int -> (Int -> a) -> m (MDenseVector (PrimState m ) Direct a) generateMutableDenseVector size init = do mv <- S.unsafeThaw $ S.generate size init return $! MutableDenseVector SDirect size 1 mv --- this (uncheckedMatrixSlice) will need to have its inlining quality checked --- | slice over matrix element in the range (inclusive) [xstart..xend] X [ystart .. yend] --- call as @'uncheckedMatrixSlice' matrix (xstart,ystart) (xend,yend) @ uncheckedDenseMatrixSlice :: (S.Storable elem)=> DenseMatrix or elem -> (Int,Int)-> (Int,Int)-> DenseMatrix or elem uncheckedDenseMatrixSlice (DenseMatrix SRow xdim _ ystride arr) (xstart,ystart) (xend,yend) = res where !res = DenseMatrix SRow (xend - xstart + 1) -- X : n - 0 + 1, because zero indexed (yend - ystart+1) -- Y : m - 0 + 1, because zero indexed (ystride + xstart + (xdim - xend)) -- how much start and end padding per row (S.slice ixStart (ixEnd - ixStart) arr ) !ixStart = (xstart+ystart*ystride) !ixEnd = (xend+yend*ystride) uncheckedDenseMatrixSlice (DenseMatrix SColumn _ ydim xstride arr) (xstart,ystart) (xend,yend) = res where !res = DenseMatrix SColumn (xend - xstart + 1) (yend - ystart+1) (xstride + ystart + (ydim - yend)) (S.slice ixStart (ixEnd - ixStart) arr ) !ixStart = (ystart+xstart*xstride) !ixEnd = (yend+xend*xstride) -- | tranposeMatrix does a shallow transpose that swaps the format and the x y params, but changes nothing -- in the memory layout. -- Most applications where transpose is used in a computation need a deep, copying, tranpose operation transposeDenseMatrix :: (inor ~ (TransposeF outor) , outor ~ (TransposeF inor) ) => DenseMatrix inor elem -> DenseMatrix outor elem transposeDenseMatrix (DenseMatrix orient x y stride arr)= (DenseMatrix (sTranpose orient) y x stride arr) {- need an init with index/ map with index, etc utils≤ -}