#include #include #include module Bindings.HDF5.Raw.H5Z where import Data.Int import Data.Word import Foreign.C.String import Foreign.C.Types import Foreign.Ptr import Foreign.Storable import Bindings.HDF5.Raw.H5 import Bindings.HDF5.Raw.H5I import Foreign.Ptr.Conventions -- |Filter identifiers. Values 0 through 255 are for filters defined by the -- HDF5 library. Values 256 through 511 are available for testing new -- filters. Subsequent values should be obtained from the HDF5 development -- team at . These values will never change -- because they appear in the HDF5 files. #newtype H5Z_filter_t, Eq -- |no filter #newtype_const H5Z_filter_t, H5Z_FILTER_ERROR -- |reserved indefinitely #newtype_const H5Z_filter_t, H5Z_FILTER_NONE -- |deflation like gzip #newtype_const H5Z_filter_t, H5Z_FILTER_DEFLATE -- |shuffle the data #newtype_const H5Z_filter_t, H5Z_FILTER_SHUFFLE -- |fletcher32 checksum of EDC #newtype_const H5Z_filter_t, H5Z_FILTER_FLETCHER32 -- |szip compression #newtype_const H5Z_filter_t, H5Z_FILTER_SZIP -- |nbit compression #newtype_const H5Z_filter_t, H5Z_FILTER_NBIT -- |scale+offset compression #newtype_const H5Z_filter_t, H5Z_FILTER_SCALEOFFSET -- |filter ids below this value are reserved for library use #newtype_const H5Z_filter_t, H5Z_FILTER_RESERVED -- |maximum filter id #newtype_const H5Z_filter_t, H5Z_FILTER_MAX -- |Symbol to remove all filters in 'h5p_remove_filter' #newtype_const H5Z_filter_t, H5Z_FILTER_ALL -- |Maximum number of filters allowed in a pipeline -- (should probably be allowed to be an unlimited amount, but -- currently each filter uses a bit in a 32-bit field, so the -- format would have to be changed to accomodate that) #num H5Z_MAX_NFILTERS -- ** Flags for filter definition (stored) -- |definition flag mask #num H5Z_FLAG_DEFMASK -- |filter is mandatory #num H5Z_FLAG_MANDATORY -- |filter is optional #num H5Z_FLAG_OPTIONAL -- ** Additional flags for filter invocation (not stored -- |invocation flag mask #num H5Z_FLAG_INVMASK -- |reverse direction; read #num H5Z_FLAG_REVERSE -- |skip EDC filters for read #num H5Z_FLAG_SKIP_EDC -- ** Special parameters for szip compression -- [These are aliases for the similar definitions in szlib.h, which we can't -- include directly due to the duplication of various symbols with the zlib.h -- header file] #num H5_SZIP_ALLOW_K13_OPTION_MASK #num H5_SZIP_CHIP_OPTION_MASK #num H5_SZIP_EC_OPTION_MASK #num H5_SZIP_NN_OPTION_MASK #num H5_SZIP_MAX_PIXELS_PER_BLOCK -- ** Macros for the shuffle filter -- |Number of parameters that users can set #num H5Z_SHUFFLE_USER_NPARMS -- |Total number of parameters for filter #num H5Z_SHUFFLE_TOTAL_NPARMS -- ** Macros for the szip filter -- |Number of parameters that users can set #num H5Z_SZIP_USER_NPARMS -- |Total number of parameters for filter #num H5Z_SZIP_TOTAL_NPARMS -- |\"User\" parameter for option mask #num H5Z_SZIP_PARM_MASK -- |\"User\" parameter for pixels-per-block #num H5Z_SZIP_PARM_PPB -- |\"Local\" parameter for bits-per-pixel #num H5Z_SZIP_PARM_BPP -- |\"Local\" parameter for pixels-per-scanline #num H5Z_SZIP_PARM_PPS -- ** Macros for the nbit filter -- |Number of parameters that users can set #num H5Z_NBIT_USER_NPARMS -- ** Macros for the scale offset filter -- |Number of parameters that users can set #num H5Z_SCALEOFFSET_USER_NPARMS -- ** Special parameters for ScaleOffset filter #num H5Z_SO_INT_MINBITS_DEFAULT #newtype H5Z_SO_scale_type_t #newtype_const H5Z_SO_scale_type_t, H5Z_SO_FLOAT_DSCALE #newtype_const H5Z_SO_scale_type_t, H5Z_SO_FLOAT_ESCALE #newtype_const H5Z_SO_scale_type_t, H5Z_SO_INT -- |Current version of the H5Z_class_t struct #num H5Z_CLASS_T_VERS -- |Values to decide if EDC is enabled for reading data #newtype H5Z_EDC_t #newtype_const H5Z_EDC_t, H5Z_ERROR_EDC #newtype_const H5Z_EDC_t, H5Z_DISABLE_EDC #newtype_const H5Z_EDC_t, H5Z_ENABLE_EDC #newtype_const H5Z_EDC_t, H5Z_NO_EDC -- ** Bit flags for H5Zget_filter_info #num H5Z_FILTER_CONFIG_ENCODE_ENABLED #num H5Z_FILTER_CONFIG_DECODE_ENABLED -- |Return values for filter callback function #newtype H5Z_cb_return_t #newtype_const H5Z_cb_return_t, H5Z_CB_ERROR -- |I/O should fail if filter fails. #newtype_const H5Z_cb_return_t, H5Z_CB_FAIL -- |I/O continues if filter fails. #newtype_const H5Z_cb_return_t, H5Z_CB_CONT #newtype_const H5Z_cb_return_t, H5Z_CB_NO -- |Filter callback function definition -- -- > typedef H5Z_cb_return_t (*H5Z_filter_func_t)(H5Z_filter_t filter, void* buf, -- > size_t buf_size, void* op_data); type H5Z_filter_func_t a b = FunPtr (H5Z_filter_t -> InOutArray a -> CSize -> InOut b -> IO H5Z_cb_return_t) -- |Before a dataset gets created, the \"can_apply\" callbacks for any filters used -- in the dataset creation property list are called -- with the dataset's dataset creation property list, the dataset's datatype and -- a dataspace describing a chunk (for chunked dataset storage). -- -- The \"can_apply\" callback must determine if the combination of the dataset -- creation property list setting, the datatype and the dataspace represent a -- valid combination to apply this filter to. For example, some cases of -- invalid combinations may involve the filter not operating correctly on -- certain datatypes (or certain datatype sizes), or certain sizes of the chunk -- dataspace. -- -- The \"can_apply\" callback can be the NULL pointer, in which case, the library -- will assume that it can apply to any combination of dataset creation -- property list values, datatypes and dataspaces. -- -- The \"can_apply\" callback returns positive a valid combination, zero for an -- invalid combination and negative for an error. -- -- > typedef htri_t (*H5Z_can_apply_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); #callback H5Z_can_apply_func_t, -> -> -> IO -- |After the \"can_apply\" callbacks are checked for new datasets, the \"set_local\" -- callbacks for any filters used in the dataset creation property list are -- called. These callbacks receive the dataset's private copy of the dataset -- creation property list passed in to H5Dcreate (i.e. not the actual property -- list passed in to H5Dcreate) and the datatype ID passed in to H5Dcreate -- (which is not copied and should not be modified) and a dataspace describing -- the chunk (for chunked dataset storage) (which should also not be modified). -- -- The \"set_local\" callback must set any parameters that are specific to this -- dataset, based on the combination of the dataset creation property list -- values, the datatype and the dataspace. For example, some filters perform -- different actions based on different datatypes (or datatype sizes) or -- different number of dimensions or dataspace sizes. -- -- The \"set_local\" callback can be the NULL pointer, in which case, the library -- will assume that there are no dataset-specific settings for this filter. -- -- The \"set_local\" callback must return non-negative on success and negative -- for an error. -- -- > typedef herr_t (*H5Z_set_local_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); #callback H5Z_set_local_func_t, -> -> -> IO -- |A filter gets definition flags and invocation flags (defined above), the -- client data array and size defined when the filter was added to the -- pipeline, the size in bytes of the data on which to operate, and pointers -- to a buffer and its allocated size. -- -- The filter should store the result in the supplied buffer if possible, -- otherwise it can allocate a new buffer, freeing the original. The -- allocated size of the new buffer should be returned through the 'buf_size' -- pointer and the new buffer through the BUF pointer. -- -- The return value from the filter is the number of bytes in the output -- buffer. If an error occurs then the function should return zero and leave -- all pointer arguments unchanged. -- -- > typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts, -- > const unsigned int cd_values[], size_t nbytes, -- > size_t *buf_size, void **buf); type H5Z_func_t a = FunPtr (CUInt -> CSize -> InArray CUInt -> CSize -> InOut CSize -> InOut (Ptr a) -> IO CSize) -- | The filter table maps filter identification numbers to structs that -- contain a pointers to the filter function and timing statistics. #starttype H5Z_class2_t -- | Version number of the H5Z_class_t struct #field version, CInt -- | Filter ID number #field id, -- | Does this filter have an encoder? #field encoder_present, CUInt -- | Does this filter have a decoder? #field decoder_present, CUInt -- | Comment for debugging #field name, CString -- | The \"can apply\" callback for a filter #field can_apply, -- | The \"set local\" callback for a filter #field set_local, -- | The actual filter function #field filter, H5Z_func_t () #stoptype -- |This function registers a new filter. -- -- Returns non-negative on success, negative on failure. -- -- > herr_t H5Zregister(const void *cls); #ccall H5Zregister, In -> IO -- |This function unregisters a filter. -- -- Returns non-negative on success, negative on failure. -- -- > herr_t H5Zunregister(H5Z_filter_t id); #ccall H5Zunregister, -> IO -- |Check if a filter is available -- -- > htri_t H5Zfilter_avail(H5Z_filter_t id); #ccall H5Zfilter_avail, -> IO -- |Gets information about a pipeline data filter and stores it -- in 'filter_config_flags'. -- -- Returns non-negative on success, negative on failure. -- -- > herr_t H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags); #ccall H5Zget_filter_info, -> Out CUInt -> IO