name: heatitup version: 0.5.4.0 synopsis: Find and annotate ITDs. description: Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spacer using heat diffusion. homepage: http://github.com/GregorySchwartz/heatitup#readme license: GPL-3 license-file: LICENSE author: Gregory W. Schwartz maintainer: gsch@pennmedicine.upenn.edu copyright: 2019 Gregory W. Schwartz category: Bioinformatics build-type: Simple -- extra-source-files: cabal-version: >=1.10 library hs-source-dirs: src exposed-modules: Types , Utility , Load , Repeated , Diffusion , Spacer , Classify , Plot , Print build-depends: base >= 4.7 && < 5 , bytestring , bytestring-show , cassava , colour , containers , diagrams-lib , edit-distance , fasta , lens , pipes , pipes-bytestring , pipes-csv , safe , string-similarity , stringsearch , suffixtree , vector ghc-options: -O2 default-language: Haskell2010 executable heatitup hs-source-dirs: app main-is: Main.hs ghc-options: -threaded -rtsopts -O2 build-depends: base , heatitup , bytestring , colour , containers , diagrams-core , diagrams-lib , diagrams-pgf , diagrams-svg , diagrams-html5 , diagrams-rasterific , fasta , lens , optparse-applicative , pipes , pipes-bytestring , pipes-csv , safe , vector default-language: Haskell2010 source-repository head type: git location: https://github.com/githubuser/heatitup