heatitup-complete-0.5.3.3: Find and annotate ITDs with assembly or read pair joining.

Safe Haskell	None
Language	Haskell2010

Blast

Synopsis

filterBlastBamRows :: Int -> Command -> Maybe Args -> Subject -> Query -> [BamRow] -> Shell [BamRow]
blastBamToFasta :: BamRow -> [Text]

Documentation

filterBlastBamRows :: Int -> Command -> Maybe Args -> Subject -> Query -> [BamRow] -> Shell [BamRow] Source #

Filter out BamRows that do not successfully align to the reference.

blastBamToFasta :: BamRow -> [Text] Source #

Convert a bam row to fasta for a quick blast check.