cabal-version: >=1.10
name: hierarchical-spectral-clustering
version: 0.5.0.0
license: GPL-3
license-file: LICENSE
copyright: 2019 Gregory W. Schwartz
maintainer: gsch@pennmedicine.upenn.edu
author: Gregory W. Schwartz
homepage: http://github.com/GregorySchwartz/hierarchical-spectral-clustering#readme
synopsis: Hierarchical spectral clustering of a graph.
description:
    Generate a tree of hierarchical spectral clustering using Newman-Girvan modularity as a stopping criteria.
category: Bioinformatics
build-type: Simple

source-repository head
    type: git
    location: https://github.com/GregorySchwartz/hierarchical-spectral-clustering

library
    exposed-modules:
        Math.Clustering.Hierarchical.Spectral.Dense
        Math.Clustering.Hierarchical.Spectral.Sparse
        Math.Clustering.Hierarchical.Spectral.Load
        Math.Clustering.Hierarchical.Spectral.Types
        Math.Clustering.Hierarchical.Spectral.Utility
        Math.Graph.Components
        Math.Graph.Types
    hs-source-dirs: src
    other-modules:
        Math.Clustering.Hierarchical.Spectral.Test
    default-language: Haskell2010
    ghc-options: -O2
    build-depends:
        base >=4.7 && <5,
        aeson >=1.3.1.1,
        cassava >=0.5.1.0,
        clustering >=0.4.0,
        containers >=0.5.11.0,
        hierarchical-clustering >=0.4.6,
        hmatrix >=0.19.0.0,
        fgl >=5.6.0.0,
        managed >=1.0.6,
        modularity >=0.2.1.1,
        mtl >=2.2.2,
        mwc-random >=0.13.6.0,
        safe >=0.3.17,
        sparse-linear-algebra >=0.3.1,
        spectral-clustering >=0.3.1.2,
        streaming >=0.2.1.0,
        streaming-bytestring >=0.1.6,
        streaming-cassava >=0.1.0.1,
        streaming-with >=0.2.0.0,
        text >=1.2.3.0,
        tree-fun >=0.8.1.0,
        vector >=0.12.0.1

executable cluster-tree
    main-is: Main.hs
    hs-source-dirs: app
    default-language: Haskell2010
    ghc-options: -threaded -rtsopts -O2
    build-depends:
        base >=4.11.1.0,
        hierarchical-spectral-clustering -any,
        aeson >=1.3.1.1,
        aeson-pretty >=0.8.7,
        bytestring >=0.10.8.2,
        cassava >=0.5.1.0,
        containers >=0.5.11.0,
        directory >=1.3.1.5,
        filepath >=1.4.2,
        hmatrix >=0.19.0.0,
        lens >=4.16.1,
        optparse-generic >=1.3.0,
        safe >=0.3.17,
        text >=1.2.3.0,
        text-show >=3.7.4,
        vector >=0.12.0.1