Safe Haskell	None
Language	Haskell98

Bio.MemeXML

Description

Parse Multiple EM for Motif Elicitation (MEME) XML output. xml parsing is done with the HXT libary. For more information on MEME consult: http://meme.nbcr.net/meme/

Synopsis

Documentation

parseXML :: String -> IOStateArrow s b XmlTree Source

Parse XML results in XML format

atTag :: ArrowXml a => String -> a XmlTree XmlTree Source

gets all subtrees with the specified tag name

atId :: ArrowXml a => String -> a XmlTree XmlTree Source

gets all subtrees with the specified id attribute

rstrip :: String -> String Source

removes whitespace characters

getMemeResult :: ArrowXml a => a XmlTree MemeResult Source

gets the whole memexml document tree

getTrainingSet :: ArrowXml a => a XmlTree TrainingSet Source

get the Training set subtree

getMemeAlphabet :: ArrowXml a => a XmlTree MemeAlphabet Source

getLetter :: ArrowXml a => a XmlTree MemeLetter Source

getAmbigs :: ArrowXml a => a XmlTree MemeAmbigs Source

getLetterFrequencies :: ArrowXml a => a XmlTree LetterFrequencies Source

getModel :: ArrowXml a => a XmlTree Model Source

get the model subtree

getBackgroundFrequencies :: ArrowXml a => a XmlTree BackgroundFrequencies Source

getScannedSiteSummary :: ArrowXml a => a XmlTree ScannedSiteSummary Source

getScannedSites :: ArrowXml a => a XmlTree ScannedSites Source

getScannedSite :: ArrowXml a => a XmlTree ScannedSite Source

getSequence :: ArrowXml a => a XmlTree Sequence Source

getMotif :: ArrowXml a => a XmlTree Motif Source

get a result motif

getContributingSite :: ArrowXml a => a XmlTree ContributingSite Source

module Bio.MemeData