modify-fasta-0.8.1.3: Modify fasta (and CLIP) files in several optional ways

Safe HaskellNone
LanguageHaskell98

TransformCloneList

Synopsis

Documentation

onlyMutations :: CodonMut -> Text -> Text -> CloneEntry -> CloneEntry Source

Replace codons that have more than CodonMut mutations (make them "---" codons) and don't have gaps in them.

frequentMutations :: Maybe Int -> Maybe Int -> Maybe Double -> CloneEntry -> CloneEntry Source

Only include codons containing mutations found in a certain number of mutants