Types

Documentation

data GeneticUnit

Constructors

AminoAcid

Nucleotide

Instances

Read GeneticUnit

Methods

readsPrec :: Int -> ReadS GeneticUnit

readList :: ReadS [GeneticUnit]

readPrec :: ReadPrec GeneticUnit

readListPrec :: ReadPrec [GeneticUnit]

Show GeneticUnit

Methods

showsPrec :: Int -> GeneticUnit -> ShowS

show :: GeneticUnit -> String

showList :: [GeneticUnit] -> ShowS

data FrameType

Constructors

InFrame

OutFrame

Instances

Read FrameType

Methods

readsPrec :: Int -> ReadS FrameType

readList :: ReadS [FrameType]

readPrec :: ReadPrec FrameType

readListPrec :: ReadPrec [FrameType]

Show FrameType

Methods

showsPrec :: Int -> FrameType -> ShowS

show :: FrameType -> String

showList :: [FrameType] -> ShowS

type ID = Int

type Codon = Text

type CodonMut = Int

type Field = Int

type Start = Int

type Stop = Int

type Position = Int

type Frame = Int

type CloneEntry = (Germline, [FastaSequence])

type FillInValue = (Field, Start, Char)

type CodonTable = [(Text, Char)]

type Mutation = (Char, Char)

type CountMap = Map (Position, Mutation) Int

type CodonMutations = [[(Position, Mutation)]]