The sequor package

[Tags:bsd3, library, program]

A sequence labeler based on Collins's sequence perceptron.

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Versions 0.1, 0.2, 0.2.2, 0.2.3, 0.3.0, 0.3.1, 0.3.2, 0.4.2, 0.7.0, 0.7.1, 0.7.2, 0.7.5
Dependencies array (>=0.2), base (>=3 && <5), binary (>=0.5), bytestring (>=0.9), containers (>=0.2), mtl (>=1.1), utf8-string (>=0.3), vector (>=0.5) [details]
License BSD3
Author Grzegorz Chrupała
Stability Unknown
Category Natural Language Processing
Home page
Uploaded Fri Sep 24 10:49:38 UTC 2010 by GrzegorzChrupala
Distributions NixOS:0.7.5
Downloads 2210 total (20 in the last 30 days)
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Status Docs not available [build log]
All reported builds failed as of 2016-12-28 [all 7 reports]


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Readme for sequor

Readme for sequor-0.1

sequor 0.1

AUTHOR: Grzegorz Chrupała <>

Sequor is a sequence labeler based on Collins's sequence
perceptron. Sequor has a flexible feature template language and is
meant mainly for NLP applications such as Part of Speech tagging,
syntactic chunking or Named Entity labeling.


With Sequor you can learn a model from sequences manually annotated
with labels, and then apply this model to new data in order to add
labels. Sequor is meant to be used mainly with linguistic data, for
example to learn Part of Speech tagging, syntactic chunking or Named
Entity labeling.
In order to learn a model from labeled data call sequor like this:

FEATURE-TEMPLATE - specification of which features to use. For an 
		   example see data/AllFeatures.txt
LEARNING-RATE    - positive number (=<1) which controls how fast learning is
	           0.1 is a reasonable default
BEAM-SIZE        - positive integer controlling the size of the beam. 
ITERATIONS       - positive integer controlling for how many iterations to train
MIN-DICT-COUNT   - positive integer specifying how many times an indexed 
	           feature has to use the label dictionary for this feature. 
                   Using a large number will effectively disable use of label
TRAIN-FILE       - annotated data in CoNLL format. Sequences separated by 
		   blank lines, features separated by space
HELDOUT-FILE     - annotated heldout data. To disable use an empty file 
MODEL-FILE       - name of the file where the learned model will be stored

In order to apply the learned model to new data, call:


Data files should be in the UTF-8 encoding.

As an example we can use data annotated with syntactic chunk labels in
the data directory. For example:

./bin/sequor train data/all.features 0.1 10 5 50 \
    data/train.conll data/devel.conll model

./bin/sequor predict model < data/test.conll > data/test.labels


Sequor uses a small language for specifying feature templates to use
when learing. This section gives an informal overview of this
language.  Sequor uses the simple CoNLL format for the input files. In
this format sentences are separated by blank lines. Each line
represents a single token (word). Each token should have the same
fixed number of space-separated fields, where the last field is the
label, e.g.

der d ART I-NC O
Europäischen europäisch ADJA I-NC ORG
Union Union NN I-NC ORG

The template language treats the input sentence as a matrix of
features (i.e. field values) and allows you to select and apply some
transformations to those features.

The language consists of a number predefined functions. By calling the
functions with certain argument you can specify the feature set to
use. As an example consider the following template: 
Cat [ Cell 0 0, Suffix 2 (Cell 0 0), Row -1, Row 1 ]. 
It specifies the following features: the first field in the current
token, the two-characted suffix of the first field of the current
token, all the fields of the previous token and all the fields of the
following token. 


Cell r c		Selects field in row r and column c. 
Rect r c r' c		Selects all features in the rectangle
       	    		whose upper-left corner is in row r column c
			and lower-right corner is in row r' column c'.
Row r			Selects all features in row r.
MarkNull f              If feature does not exist, replace it with a NULL mark
	 		Typically used when absence of feature is significant, 
			e.g. to mark the beginning of the sentence.
Index f                 Marks the feature f to use in indexing for label 
Cat [f1,f2,...,fn]      Selects features in the list.
Cart f f'               Creates Cartesian product of feature sets f and f'. 
       			If f and f' are singletons, simply conjoins the 
			two features.
Lower f			Maps f to lower case characters.
Suffix i f		Takes suffix of i character length of feature f.
Prefix i f		Takes prefix of i character langth of feature f.
WordShape f		Creates a specification of which charater classes such 
	  		as lower case and upper case letters, digits or 
			punctuation occur in feature f.

Remarks: Rows are indexed relative to the current token (0).  Columns
are indexed starting with 0.  Functions which take features as
arguments can be passed either singleton features or sequences of
features. If passed a sequence they are applied to each of its
elements. For example (Suffix 3 (Row 0)) will return the sequence of
features formed by taking the suffix of length 3 of each field of row

For more examples see files all.features and example.features in the
directory data.