xsact: Cluster EST sequences
|Versions||1.6, 1.7.2, 1.7.3|
|Dependencies||array, base (>3 && <4.2), containers, directory, process, random, unix [details]|
|Maintainer||Ketil Malde <firstname.lastname@example.org>|
|Uploaded||by KetilMalde at Wed Oct 7 13:10:24 UTC 2009|
|Executables||xtract, xplit, xsact|
|Downloads||1172 total (11 in the last 30 days)|
|Rating||(no votes yet) [estimated by rule of succession]|
|Status||Docs not available [build log]
All reported builds failed as of 2016-12-31 [all 7 reports]
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Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries:
xsact; implements a complete multiple-matching clustering algorithm.
xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters.
xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words.
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