Name: xsact Version: 1.7.3 License: GPL License-File: LICENSE Author: Ketil Malde Maintainer: Ketil Malde Category: Bioinformatics Synopsis: Cluster EST sequences Description: Xsact is an EST clustering program with a variety of output options. This package exposes the internal libraries, and provides 4 binaries: . * xsact; implements a complete multiple-matching clustering algorithm. * xplit; This implements a simple splitter for xsact's UniGene-formatted files. Useful if you want to run an assembler on individual clusters. * xtract; the eXperimental TRanscript Assembly/Consensus Tool. The idea is to construct the splice graph from each EST cluster in the input, by first constructing and then traversing the de Bruijn graph of $k-1$-words. Homepage: http://malde.org/~ketil/ Cabal-Version: >= 1.2 Build-Type: Simple Tested-With: GHC==6.10.4 Executable xsact Main-Is: Xsact.lhs Hs-Source-Dirs: . Build-Depends: base>3&&<4.2, containers, random, array, unix, directory, process Other-Modules: Clix, EST, Fasta, Suffix, Pairs, Stats, Cluster, Gene, Indexed, ANSI Ghc-Options: -Wall -O2 -funbox-strict-fields Executable xplit Main-Is: Xplit.lhs Other-Modules: Util Hs-Source-Dirs: . Ghc-Options: -Wall -O2 -funbox-strict-fields Build-Depends: base>3&&<4.2 Executable xtract Main-Is: Xtract.lhs Other-Modules: Fasta, WordMap, SpliceGraph, EST, Util Hs-Source-Dirs: . Ghc-Options: -Wall -O2 -funbox-strict-fields Build-Depends: base>3&&<4.2, random, array, containers