| Safe Haskell | Safe-Infered |
|---|
Biobase.Turner
Description
The Turner2004 data structure reflects the RNA (and DNA) energy
parameters known as the Turner 2004 data set.
In general, have a look here: http://rna.urmc.rochester.edu/NNDB/turner04/index.html where parameters are explained.
- type PP = (((Z :. Nuc) :. Nuc) :. Nuc) :. Nuc
- type PN = ((Z :. Nuc) :. Nuc) :. Nuc
- type PNN = (((Z :. Nuc) :. Nuc) :. Nuc) :. Nuc
- type PPNN = (PP :. Nuc) :. Nuc
- type PPNNN = PPNN :. Nuc
- type PPNNNN = PPNNN :. Nuc
- data Turner2004 = Turner2004 {
- stack :: Arr0 PP Double
- dangle3 :: Arr0 PN Double
- dangle5 :: Arr0 PN Double
- hairpinL :: Arr0 DIM1 Double
- hairpinMM :: Arr0 PNN Double
- hairpinLookup :: Map ByteString Double
- hairpinGGG :: Double
- hairpinCslope :: Double
- hairpinCintercept :: Double
- hairpinC3 :: Double
- bulgeL :: Arr0 DIM1 Double
- bulgeSingleC :: Double
- iloop1x1 :: Arr0 PPNN Double
- iloop2x1 :: Arr0 PPNNN Double
- iloop2x2 :: Arr0 PPNNNN Double
- iloopMM :: Arr0 PNN Double
- iloop2x3MM :: Arr0 PNN Double
- iloop1xnMM :: Arr0 PNN Double
- iloopL :: Arr0 DIM1 Double
- multiMM :: Arr0 PNN Double
- ninio :: Double
- maxNinio :: Double
- multiOffset :: Double
- multiNuc :: Double
- multiHelix :: Double
- multiAsym :: Double
- multiStrain :: Double
- extMM :: Arr0 PNN Double
- coaxial :: Arr0 PP Double
- coaxStack :: Arr0 PNN Double
- tStackCoax :: Arr0 PNN Double
- largeLoop :: Double
- termAU :: Double
- intermolecularInit :: Double
Documentation
data Turner2004 Source
Constructors
| Turner2004 | |
Fields
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