xsact-1.6: Cluster EST sequences Contents Index

Cluster

Synopsis

type Cluster = (Set EST, [SMPair]) cluster_single :: Bool -> [EST] -> Int -> [SMPair] -> [Cluster] cluster_simple :: Bool -> [EST] -> Int -> [SMPair] -> [Cluster] cluster_all :: Bool -> [EST] -> Int -> [SMPair] -> [Cluster] labels :: Cluster -> String newick :: Cluster -> String unigene :: Cluster -> String

Documentation

type Cluster = (Set EST, [SMPair])

cluster_single :: Bool -> [EST] -> Int -> [SMPair] -> [Cluster]

cluster_simple :: Bool -> [EST] -> Int -> [SMPair] -> [Cluster]

cluster builds a single linkage transitive closure

cluster_all :: Bool -> [EST] -> Int -> [SMPair] -> [Cluster]

labels :: Cluster -> String

newick :: Cluster -> String

unigene :: Cluster -> String

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