xsact-1.6: Cluster EST sequences Contents Index

WordMap

Documentation

type WordMap = Map Key [Suffix]

type Key = Integer

genkeys :: Int -> Int -> EST -> [(Int, Key)]

genkeysN :: Int -> Int -> EST -> [(Int, Key)]

list2keys :: Int -> [Gene] -> [Key]

mkWordMap :: Int -> [EST] -> WordMap

get_k :: WordMap -> Int

wmlookup :: WordMap -> Key -> [Suffix]

n2i :: [Gene] -> Key

i2n :: Key -> [Gene]

i2s :: Key -> String

shift_left :: Int -> Key -> Gene -> Key

shift_right :: Int -> Key -> Gene -> Key

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