name: AlignmentAlgorithms version: 0.0.2.0 author: Christian Hoener zu Siederdissen, 2013-2015 copyright: Christian Hoener zu Siederdissen, 2013-2015 homepage: https://github.com/choener/AlignmentAlgorithms bug-reports: https://github.com/choener/AlignmentAlgorithms/issues maintainer: choener@bioinf.uni-leipzig.de category: Algorithms, Data Structures, Bioinformatics, Linguistics license: GPL-3 license-file: LICENSE build-type: Simple stability: experimental cabal-version: >= 1.10.0 tested-with: GHC == 7.8.4, GHC == 7.10.1 synopsis: Collection of alignment algorithms description: . A selection of (sequence) alignment algorithms. Both terminal, and syntactic variables, as well as the index type is not fixed here. This makes it possible to select the correct structure of the grammar here, but bind the required data type for alignment in user code. . That being said, these algorithms are mostly aimed towards sequence alignment problems. . List of grammars: . * global alignment (Needleman-Wunsch style) . Extra-Source-Files: README.md changelog.md library build-depends: base >= 4.7 && < 4.9 , ADPfusion >= 0.4.0.2 && < 0.4.2 , containers >= 0.5 && < 0.6 , fmlist >= 0.9 && < 0.10 , FormalGrammars >= 0.2.1 && < 0.2.2 , GrammarProducts >= 0.1.1 && < 0.1.2 , PrimitiveArray >= 0.6.0 && < 0.6.2 , vector >= 0.10 && < 0.11 exposed-modules: DP.Alignment.Global.Tapes2 default-language: Haskell2010 default-extensions: BangPatterns , FlexibleContexts , FlexibleInstances , MultiParamTypeClasses , QuasiQuotes , TemplateHaskell , TypeFamilies ghc-options: -O2 -funbox-strict-fields source-repository head type: git location: git://github.com/choener/AlignmentAlgorithms