Biobase.ExtSS.Import
Description
Imports an extended secondary structure from bytestring. Such a structure is defined as:
# comment 1 -- comments # comment ... -- comments # comment n -- comments AUGACUACUAGC -- sequence part 3 9 cWW -- detailed pair information (indented)
- eneeExtSS :: Monad m => Enumeratee ByteString [ExtSS] m a
- convLine :: ByteString -> (Int, Int, ByteString)
- fromFile :: FilePath -> IO [ExtSS]
Documentation
eneeExtSS :: Monad m => Enumeratee ByteString [ExtSS] m aSource
Convert input bytestring into a list of extended secondary structures.
convLine :: ByteString -> (Int, Int, ByteString)Source
Convert a line into an extended pair.