The BiobaseFR3D package

[Tags:gpl, library]

Provides importers for FR3D resource files. Of particular interest are basepairs files which describe canonical and non-canonical (non-Watson-Crick) base pairings in RNA secondary structure.

The original FR3D paper is:

FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D Structures, Michael Sarver; Craig L. Zirbel; Jesse Stombaugh; Ali Mokdad; Neocles B. Leontis. /Journal of Mathematical Biology/ (2008) 56:215–252.

Properties

Versions 0.1.0.1, 0.1.1.0, 0.1.3.0, 0.2.2.0, 0.2.3.0
Dependencies base (>3 && <5), BiobaseXNA (>=0.5.4), bytestring, filemanip, iteratee [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Stability experimental
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Uploaded Tue Oct 4 11:53:50 UTC 2011 by ChristianHoener
Distributions NixOS:0.2.3.0
Downloads 1513 total (15 in the last 30 days)
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Status Docs uploaded by user
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