name:           BiobaseInfernal
version:        0.0.2.0
author:         Christian Hoener zu Siederdissen
maintainer:     choener@tbi.univie.ac.at
category:       Bioinformatics
synopsis:       Infernal CM manipulation
license:        GPL-3
license-file:   LICENSE
build-type:     Simple
stability:      experimental
cabal-version:  >= 1.4.0
description:
                This library provides functions to load Infernal covariance
                models. Models can be converted from score mode into
                probability mode. They, too, can be switched into local mode.
                In additon, Stockholm files can be loaded.


library
  build-depends:
    base >= 4 && < 5,
    parsec >= 3 && < 4,
    containers,
    array,

    Biobase >= 0.0.2 && < 0.0.3

  exposed-modules:
    Biobase.Infernal.CM
    Biobase.Infernal.CM.Import
    Biobase.Infernal.CM.Export
    Biobase.Infernal.Stockholm
    Biobase.Infernal.Stockholm.Import

  ghc-options:
    -O2