BiobaseTypes-0.2.0.1: Collection of types for bioinformatics

Safe HaskellNone
LanguageHaskell2010

DP.Backtraced.Codon

Description

The Backtraced column structure is for codon-based alignments, including special cases.

Synopsis

Documentation

data BtCodon c aa Source #

A single Backtraced column. Since such a column will be part of a Backtraced (Z:.BtCodon c aa:. ...) structure, it is always possible to extend even further, by having more entries.

Constructors

Match

A canonical match. A codon and the translated amino acid need to be set.

Fields

Frameshift

A frameshifting match. The vector of frameshifted nucleotides will have a number of characters c, that encode for a single amino acid.

Fields

Insert 

Fields

Shifted 

Fields

Region 

Fields

Delete