name:           BiobaseVienna
version:        0.0.2.3
author:         Christian Hoener zu Siederdissen
maintainer:     choener@tbi.univie.ac.at
copyright:      Christian Hoener zu Siederdissen, 2010
category:       Bioinformatics
synopsis:       (deprecated) ViennaRNA parameter library
license:        GPL-3
license-file:   LICENSE
build-type:     Simple
stability:      experimental
cabal-version:  >= 1.4.0
description:
                Import and export of ViennaRNA-style parameters for RNA
                secondary structure prediction.

extra-source-files:
  parfiles/Turner2004GH.par,
  templates/cheader

library
  build-depends:
    base >=4 && <5,
    bytestring,
    containers,
    file-embed >=0.0.3,
    parsec >=3,
    split >=0.1.2,
    tuple >=0.2.0.1,
    vector >=0.7 && <0.8,
    directory >=1,

    PrimitiveArray >=0.0.2 && <0.0.3,
    ParsecTools >=0.0.2 && <0.0.3,
    HsTools >=0.0.1.1,
    Biobase >=0.0.2,
    BiobaseTurner >=0.0.2,
    BiobaseTypes >=0.0.2

  exposed-modules:
    Biobase.Vienna
    Biobase.Vienna.Import.Turner
    Biobase.Vienna.Import.ViennaPar
    Biobase.Vienna.Export.ViennaPar
    Biobase.Vienna.Export.ViennaC
    Biobase.Vienna.Modification.NonStandard
    Biobase.Vienna.Modification.Temperature
    Biobase.Vienna.Modification.Partition
    Biobase.Vienna.Default

  ghc-options:
    -O2