Biobase.Primary.Nuc.Conversion

Convert between different nucleotide representations

Single-character translations.

rnaTdna :: Letter * RNA -> Letter * DNA

Transform RNA to DNA. That means change U to T and keep the other characters as is.

dnaTrna :: Letter * DNA -> Letter * RNA

Transform DNA to RNA. That means change T to U and keep the other characters as is.

rnaGxna :: Letter * RNA -> Letter * XNA

Generalize an RNA character to a XNA character.

dnaGxna :: Letter * DNA -> Letter * XNA

Generalize a DNA character to a XNA character.

xnaSrna :: Letter * XNA -> Letter * RNA

Specialize XNA to RNA, T becomes N.

xnaSdna :: Letter * XNA -> Letter * DNA

Specialize XNA to DNA, U becomes N.

Transcription between RNA and DNA. Both on the individual sequence level,

Orphan instances

Transcribe (Primary * DNA)

Associated Types

type TranscribeTo (Primary * DNA) :: *

Methods

transcribe :: Iso' (Primary * DNA) (TranscribeTo (Primary * DNA))

Transcribe (Primary * RNA)

Associated Types

type TranscribeTo (Primary * RNA) :: *

Methods

transcribe :: Iso' (Primary * RNA) (TranscribeTo (Primary * RNA))

Transcribe (Letter * DNA)

Associated Types

type TranscribeTo (Letter * DNA) :: *

Methods

transcribe :: Iso' (Letter * DNA) (TranscribeTo (Letter * DNA))

Transcribe (Letter * RNA)

Associated Types

type TranscribeTo (Letter * RNA) :: *

Methods

transcribe :: Iso' (Letter * RNA) (TranscribeTo (Letter * RNA))