Biobase.Primary.Nuc.Conversion

Convert between different nucleotide representations

Single-character translations.

rnaTdna :: Letter RNA n1 -> Letter DNA n2

Transform RNA to DNA. That means change U to T and keep the other characters as is.

dnaTrna :: Letter DNA n1 -> Letter RNA n2

Transform DNA to RNA. That means change T to U and keep the other characters as is.

rnaGxna :: Letter RNA n1 -> Letter XNA n2

Generalize an RNA character to a XNA character.

dnaGxna :: Letter DNA n1 -> Letter XNA n2

Generalize a DNA character to a XNA character.

xnaSrna :: Letter XNA n1 -> Letter RNA n2

Specialize XNA to RNA, T becomes N.

xnaSdna :: Letter XNA n1 -> Letter DNA n2

Specialize XNA to DNA, U becomes N.

Transcription between RNA and DNA. Both on the individual sequence level,

Orphan instances

Transcribe (Primary DNA n)

Associated Types

type TranscribeTo (Primary DNA n) :: Type

Methods

transcribe :: Iso' (Primary DNA n) (TranscribeTo (Primary DNA n))

Transcribe (Primary RNA n)

Associated Types

type TranscribeTo (Primary RNA n) :: Type

Methods

transcribe :: Iso' (Primary RNA n) (TranscribeTo (Primary RNA n))

Transcribe (Letter DNA n)

Associated Types

type TranscribeTo (Letter DNA n) :: Type

Methods

transcribe :: Iso' (Letter DNA n) (TranscribeTo (Letter DNA n))

Transcribe (Letter RNA n)

Associated Types

type TranscribeTo (Letter RNA n) :: Type

Methods

transcribe :: Iso' (Letter RNA n) (TranscribeTo (Letter RNA n))