Biobase.Primary.Nuc.RNA

Documentation

pattern A :: forall k (n :: k). Letter RNA n

pattern C :: forall k (n :: k). Letter RNA n

pattern G :: forall k (n :: k). Letter RNA n

pattern U :: forall k (n :: k). Letter RNA n

pattern N :: forall k (n :: k). Letter RNA n

acgu :: [Letter RNA n]

charRNA :: Char -> Letter RNA n

rnaChar :: Letter RNA n -> Char

crna :: Iso' Char (Letter RNA n)

An isomorphism from Char to 'Letter RNA'. This assumes that the underlying Chars actually represent an RNA sequence. This allows typesafe modification of RNA sequences since only [A,C,G,U,N] are allowed.

rnaSeq :: MkPrimary p RNA n => p -> Primary RNA n

Orphan instances

LetterChar RNA (n :: k)

Methods

letterChar :: Letter RNA n -> Char

charLetter :: Char -> Letter RNA n

MkPrimary (Vector Char) RNA (n :: k)

Methods

primary :: Vector Char -> Primary RNA n

IsString [Letter RNA n]

Methods

fromString :: String -> [Letter RNA n]

Bounded (Letter RNA n)

Methods

minBound :: Letter RNA n

maxBound :: Letter RNA n

Enum (Letter RNA n)

Methods

succ :: Letter RNA n -> Letter RNA n

pred :: Letter RNA n -> Letter RNA n

toEnum :: Int -> Letter RNA n

fromEnum :: Letter RNA n -> Int

enumFrom :: Letter RNA n -> [Letter RNA n]

enumFromThen :: Letter RNA n -> Letter RNA n -> [Letter RNA n]

enumFromTo :: Letter RNA n -> Letter RNA n -> [Letter RNA n]

enumFromThenTo :: Letter RNA n -> Letter RNA n -> Letter RNA n -> [Letter RNA n]

Read (Letter RNA n)

Methods

readsPrec :: Int -> ReadS (Letter RNA n)

readList :: ReadS [Letter RNA n]

readPrec :: ReadPrec (Letter RNA n)

readListPrec :: ReadPrec [Letter RNA n]

Show (Letter RNA n)

Methods

showsPrec :: Int -> Letter RNA n -> ShowS

show :: Letter RNA n -> String

showList :: [Letter RNA n] -> ShowS

ToJSON (Letter RNA n)

Methods

toJSON :: Letter RNA n -> Value

toEncoding :: Letter RNA n -> Encoding

toJSONList :: [Letter RNA n] -> Value

toEncodingList :: [Letter RNA n] -> Encoding

FromJSON (Letter RNA n)

Methods

parseJSON :: Value -> Parser (Letter RNA n)

parseJSONList :: Value -> Parser [Letter RNA n]