name: BiobaseXNA version: 0.7.0.0 author: Christian Hoener zu Siederdissen maintainer: choener@tbi.univie.ac.at homepage: http://www.tbi.univie.ac.at/~choener/ copyright: Christian Hoener zu Siederdissen, 2011-2013 category: Bioinformatics synopsis: Efficient RNA/DNA representations license: GPL-3 license-file: LICENSE build-type: Simple stability: experimental cabal-version: >= 1.6.0 description: This is a base library for bioinformatics with emphasis on RNA and DNA primary structure. . Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well. . . . Contains data from: . Frequency and isostericity of RNA base pairs . Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis . Nucl. Acids Res. (2009) . . . . new in 0.7 . * updated to PrimitiveArray >= 0.5 . new in 0.6.2.0 . * Updated to PrimitiveArray >= 0.2.0.0 extra-source-files: sources/isostericity-matrices.csv sources/isostericity-detailed.csv library build-depends: base >3 && <5, bytestring >= 0.10 , containers >= 0.4 , csv == 0.1.2 , file-embed >= 0.0.4.7 , primitive >= 0.5 , repa >= 3.2 , text >= 0.11 , tuple >= 0.2 , vector >= 0.10 , PrimitiveArray >= 0.5 exposed-modules: Biobase.Primary Biobase.Primary.Bounds Biobase.Primary.Hashed Biobase.Secondary Biobase.Secondary.Constraint Biobase.Secondary.Diagrams Biobase.Secondary.Isostericity Biobase.Secondary.PseudoKnots Biobase.Secondary.Vienna ghc-options: -O2 -funbox-strict-fields source-repository head type: git location: git://github.com/choener/BiobaseXNA