The BiobaseXNA package

[ Tags: bioinformatics, gpl, library, program ] [ Propose Tags ]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011


[Skip to Readme]

Properties

Versions 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0, 0.9.2.1, 0.9.3.0, 0.9.3.1, 0.10.0.0 (info)
Change log changelog.md
Dependencies aeson (>=0.8 && <0.10), base (>=4.7 && <4.9), bimaps (>=0.0.0.2 && <0.0.1.0), binary (==0.7.*), BiobaseXNA, bytes (==0.15.*), bytestring (==0.10.*), cereal (==0.4.*), cereal-vector (==0.2.*), cmdargs (==0.10.*), containers (==0.5.*), csv (==0.1.*), deepseq (>=1.3 && <1.5), file-embed (==0.0.8.*), hashable (==1.2.*), lens (>=4.0 && <4.13), primitive (>=0.5 && <0.7), PrimitiveArray (>=0.6.0 && <0.6.2), split (==0.2.*), text (>=1.0 && <1.3), tuple (==0.3.*), vector (==0.10.*), vector-binary-instances (==0.2.*), vector-th-unbox (==0.2.*) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011 - 2015
Author Christian Hoener zu Siederdissen
Maintainer choener@bioinf.uni-leipzig.de
Category Bioinformatics
Home page https://github.com/choener/BiobaseXNA
Bug tracker https://github.com/choener/BiobaseXNA/issues
Source repo head: git clone git://github.com/choener/BiobaseXNA
Uploaded Tue Jul 14 20:28:47 UTC 2015 by ChristianHoener
Distributions NixOS:0.10.0.0
Executables SubOptDistance
Downloads 12979 total (276 in the last 30 days)
Rating (no votes yet) [estimated by rule of succession]
Your Rating
  • λ
  • λ
  • λ
Status Docs available [build log]
Last success reported on 2015-07-14 [all 1 reports]
Hackage Matrix CI

Modules

[Index]

Downloads

Maintainer's Corner

For package maintainers and hackage trustees


Readme for BiobaseXNA-0.9.2.0

[back to package description]

Build Status

BiobaseXNA

Efficient encoding of biological sequences.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/