name: BiobaseXNA version: 0.9.2.0 author: Christian Hoener zu Siederdissen maintainer: choener@bioinf.uni-leipzig.de homepage: https://github.com/choener/BiobaseXNA bug-reports: https://github.com/choener/BiobaseXNA/issues copyright: Christian Hoener zu Siederdissen, 2011 - 2015 category: Bioinformatics synopsis: Efficient RNA/DNA representations license: GPL-3 license-file: LICENSE build-type: Simple stability: experimental tested-with: GHC == 7.8.4, GHC == 7.10.1 cabal-version: >= 1.10.0 description: This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences. . Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well. . Contains data from: . @ Frequency and isostericity of RNA base pairs Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis Nucl. Acids Res. (2009) @ . extra-source-files: sources/isostericity-matrices.csv sources/isostericity-detailed.csv sources/iupac-nucleotides sources/codontable changelog.md README.md library build-depends: base >= 4.7 && < 4.9 , aeson >= 0.8 && < 0.10 , bimaps >= 0.0.0.2 && < 0.0.1.0 , binary >= 0.7 && < 0.8 , bytes >= 0.15 && < 0.16 , bytestring >= 0.10 && < 0.11 , cereal >= 0.4 && < 0.5 , cereal-vector >= 0.2 && < 0.3 , containers >= 0.5 && < 0.6 , csv >= 0.1 && < 0.2 , deepseq >= 1.3 && < 1.5 , file-embed >= 0.0.8 && < 0.0.9 , hashable >= 1.2 && < 1.3 , lens >= 4.0 && < 4.13 , primitive >= 0.5 && < 0.7 , PrimitiveArray >= 0.6.0 && < 0.6.2 , split >= 0.2 && < 0.3 , text >= 1.0 && < 1.3 , tuple >= 0.3 && < 0.4 , vector >= 0.10 && < 0.11 , vector-binary-instances >= 0.2 && < 0.3 , vector-th-unbox >= 0.2 && < 0.3 exposed-modules: Biobase.Primary Biobase.Primary.AA Biobase.Primary.Bounds Biobase.Primary.Hashed Biobase.Primary.IUPAC Biobase.Primary.Letter Biobase.Primary.Nuc Biobase.Primary.Nuc.Conversion Biobase.Primary.Nuc.DNA Biobase.Primary.Nuc.RNA Biobase.Primary.Nuc.XNA Biobase.Primary.Trans Biobase.Primary.Unknown Biobase.Secondary Biobase.Secondary.Basepair Biobase.Secondary.Constraint Biobase.Secondary.Diagrams Biobase.Secondary.Isostericity Biobase.Secondary.Pseudoknots Biobase.Secondary.Structure Biobase.Secondary.Vienna default-extensions: BangPatterns , DeriveGeneric , EmptyDataDecls , FlexibleContexts , FlexibleInstances , GeneralizedNewtypeDeriving , LambdaCase , MultiParamTypeClasses , PatternSynonyms , ScopedTypeVariables , TemplateHaskell , TypeFamilies , TypeOperators , UndecidableInstances , ViewPatterns default-language: Haskell2010 ghc-options: -O2 -funbox-strict-fields executable SubOptDistance build-depends: base , BiobaseXNA , cmdargs >= 0.10 && < 0.11 main-is: SubOptDistance.hs hs-source-dirs: src default-language: Haskell2010 default-extensions: DeriveDataTypeable , NoMonomorphismRestriction , RecordWildCards , ScopedTypeVariables ghc-options: -O2 source-repository head type: git location: git://github.com/choener/BiobaseXNA