0.9.3.1 ------- - removed upper version bounds, bumped dependent versions - added d1Distance for fast basepair distance calculations 0.9.3.0 ------- - bigger version bump together with multiple ghc compatibility 0.9.2.1 ------- - stack.yaml, some version bumping 0.9.2.0 ------- - fixed overlapping instances in AA 0.9.1.0 ------- - introduction of pattern synonyms for letters in molecular alphabets - travis-ci integration 0.9.0.0 ------- - major cleanup of the XNA library: explicit encoding of RNA,DNA, or XNA (XNA contains both U and T) - IUPAC notation (degenerate nucleotides) has an efficient encoding as well - translation between XNA and protein (Biobase.Primary.Trans) - import Biobase.Primary to get everything under Primary.* - import Biobase.Secondary to get everything under Secondary.* - SubOptDistance now extends all structure lines of RNAsubopt with a third field, the distance - Diagrams provide methods to validate folding and cofolding secondary structure strings. - serialization capabilities for 'Letter's 0.8.3.0 ------- - bugfix version: use vector-th-unbox to generate unboxed vector instances 0.8.2.0 ------- - dotBracket -> unsafeDotBracket - new 'dotBracket' function works in the error monad 0.8.1.1 ------- - added T/U conversion functions 0.8.1.0 ------- - Biobase.Primary.IUPAC for degenerate base symbol conversion 0.8.0.0 ------- - Biobase.Codon -> Biobase.AAseq - and efficient encoding of AAseqs 0.7 --- - updated to PrimitiveArray >= 0.5 - added Codon table 0.6.2.0 ------- - Updated to PrimitiveArray >= 0.2.0.0