úμ—=      !"#$%&'()*+,-./0123456789:;< Safe-Inferred7Data structure for structural Clustal alignment format ,Data structure for Clustal alignment format ,mData type for clustal summary, containing information about the alignment process, usually printed to STDOUT 7  !"#$%&'()*+,-./01234567  !"#$%&'()*+,-./0123456    !"#$%&'()*+, -./0123456 Safe-Inferred =+Parse the input as ClustalSummary datatype >-Parse the input as ClustalAlignment datatype ?AParse the input as ClustalAlignment datatype as used in mlocarna 7+Parse Clustal alignment (.aln) from String 8AParse Clustal alignment (.aln) from filehandle 9vParse Clustal alignment (.aln) with secondary structure in dot-bracket notation from String (as produced by mlocarna) :ŒParse Clustal alignment (.aln) with secondary structure in dot-bracket notation from filehandle (as produced by mlocarna) ;6Parse Clustal summary (printed to STDOUT) from String <4Parse Clustal summary (printed to STDOUT) from file @A=BCD>EFGH?IJKLMNOP789:;<=  !"#$%&'()*+,-./0123456789:;<=789:;<,-./0123456'()*+"#$%& !  @A=BCD>EFGH?IJKLMNOP789:;<Q       !!"#$%%&'()*+,-./0123456789:;<=>?@ABCDEFGHIClustalParser-1.0.1Bio.ClustalParserBio.ClustalData$StructuralClustalAlignmentEntrySlice&structuralEntrySequenceSliceIdentifier#structuralEntryAlignedSliceSequenceStructuralClustalAlignmentSlicestructuralEntrySlicesStructuralClustalAlignmentstructuralAlignmentEntriessecondaryStructureTrackenergyClustalAlignmentEntrySliceentrySequenceSliceIdentifierentryAlignedSliceSequence spacerLengthClustalAlignmentSlice entrySlicesconservationTrackSliceClustalAlignmentEntryentrySequenceIdentifierentryAlignedSequenceClustalAlignmentalignmentEntriesconservationTrack GroupSummaryalignmentGroupIndexnumberOfAlignedSequences groupScorePairwiseAlignmentSummaryfirstSequenceIndexsecondSequenceIndexpairwiseAlignmentScoreSequenceParametersinputSequenceIndexinputSequenceIdentifierinputSequenceLengthClustalSummaryclustalw2versionsequenceFormatparametersOfInputSequencespairwiseAlignmentSummariesguideTreeFileName groupNumbergroupSummariesalignmentScorealignmentFileNameparseClustalAlignmentreadClustalAlignmentparseStructuralClustalAlignmentreadStructuralClustalAlignmentparseClustalSummaryreadClustalSummarygenParserClustalSummarygenParserClustalAlignment#genParserStructuralClustalAlignment readDoublereadIntgenParserGroupSummary!genParserPairwiseAlignmentSummarygenParserSequenceParametersmergealignmentSlicesconstructAlignmentEntriesgenParserClustalAlignmentSlicegenParserClustalEntrySlicegenSecondaryStructuregenParseEnergygenParseMlocarnaHeadergenParseAlignmentProcessStepmergeStructuralAlignmentSlices#constructStructuralAlignmentEntries(genParserStructuralClustalAlignmentSlice$genParserStructuralClustalEntrySlice