-*-change-log-*- 1.1.4 Florian Eggenhofer <egg@cs.uni-freiburg.de> 30. May 2016 * Fixed a bug in output of clustal alignments with sequence length of 60 1.1.3 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 4. July 2015 * Nucleotide sequences are now parsed by a unified function in line with IUPAC nucleotide code 1.1.2 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 3. July 2015 * Included parsing of optional field in mlocarna clustal output 1.1.1 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 2. July 2015 * Added support for cmalign clustal output . 1.1.0 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 1. July 2015 * Added Hspec test-suite for parsing functions * Added Show instances for ClustalAlignment and StructuralClustalAlignment 1.0.3 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 19. April 2015 * Added Y (pyrimidine) and R (purine) to sequence characters 1.0.2 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 19. March 2015 * Linebreaks are now filtered from structural alignment sequence identifiers 1.0.1 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 27. October 2014 * Fixed compiler warnings and updated documentation to mention structural clustal format * Added -Wall and -O2 compiler options * Added support for clustal alignments with secondary structure annotation